RnoINT0076092 @ rn6
Intron Retention
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3363147-3363649:+
Coord C1 exon
chr7:3363147-3363278
Coord A exon
chr7:3363279-3363529
Coord C2 exon
chr7:3363530-3363649
Length
251 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGG
5' ss Score
4.44
3' ss Seq
CCCCGACCTGCCCCCAACAGGGT
3' ss Score
7.94
Exon sequences
Seq C1 exon
GCACAGCCAGGGTGGAGCTCTGTGCGCAGGGCTCGTCGGACCTGGCACACCTGGATGATGGGCCCTACGAGGCGGGGGGCGAGAAGGACCAAGACCCCCGCCTCATTCCGGTCCCTGCCAACAGCTACCTTG
Seq A exon
GTAGGGACCCCTCCCTGGCCCAGGATCACTCTAACCCTCTGTTCCTTTCTCTTGTCCTCTCTCCACGCACCCATCCTTCTGTCTCTGTCTCCGTCGTTGTGTCTCTGGCTTCTTGATTTCTCTCACTTTCTTCCTTTCCTTTGTCCCGTTTCATCTTCTTCTGGCCTTTCTATCTGGCTTTGTCTCTACCCTGTGTTCCCTTCTTTTGCTGTCCTATTCCCTGGTGTCTCTCCCCGACCTGCCCCCAACAG
Seq C2 exon
GGTTGCTTTTTGTGACCAACATTGATAGCTCAGACCCCGACCAGCTGGTGTATAAAACTTTGGACCCCGCTGACCGGCTCACAGGACCAGCCGGAGACTTGACCTTGAATAGCTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905:ENSRNOT00000030453:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCAGGGTGGAGCTC
R:
GCTATTCAAGGTCAAGTCTCCGG
Band lengths:
244-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]