BtaINT0077940 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012897 | ITGA7
Description
integrin, alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr5:57880134-57880797:+
Coord C1 exon
chr5:57880134-57880389
Coord A exon
chr5:57880390-57880766
Coord C2 exon
chr5:57880767-57880797
Length
377 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GAGACCCCAGGCAGCTTGGACTG
3' ss Score
-36.85
Exon sequences
Seq C1 exon
ACCTGTGCACACCGATACGAGGCGCGGCAGCGTGTAGACCAGATCCTGGAGACGAGGGATGTGATCGGCCGCTGCTTTGTTCTCAGCCAGGACCTGGCCATCCGAGATGAGCTGGATGGTGGGGAGTGGAAGTTCTGTGAGGGACGCCCCCAGGGCCACGAACAGTTCGGCTTCTGCCAGCAGGGCACGGCGGCTGCCTTCTCCCCTGACAGCCACTATCTCCTCTTTGGGGCCCCAGGAACCTATAACTGGAAGG
Seq A exon
GTGAGTCACTCCCCGGAGAGGGGAGAAGGGAACCAAAATGTCCCAGTACCTCAGAGAGGGGGTTGGGGGCAGCATGTGGCCAAGCATGCCTGCGTGTTCACCGCCACGGAGCCCCGGGGCCCCGCCACGCCTCCCACCACATCTCGCCGGCACGCACACGACTGGGGCCATCCATCTCCTGTCCTCCGCATGGCCGAGAGTTCTGCAACATGCTGGCATGAGCCCCCACATGCCCAACCGGGGCCTGCATGCTCCAACACACCAGCCCACACCTCATCACTCCCATTCCCATCTCCGCACGCTGCCGCTGGCCGGGCTGACACGTGGTGAGTGTGATGCCACGCCCAGGGGTAGAGAGAGACCCCAGGCAGCTTGGA
Seq C2 exon
CTGGGAAGAGGGTGGAGATGGGGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012897:ENSBTAT00000017145:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGCACACCGATACGAG
R:
CTCTCCAGCCCCATCTCCAC
Band lengths:
286-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]