HsaALTD1020903-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000135424 | ITGA7
Description
integrin subunit alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr12:55700262-55700971:-
Coord C1 exon
chr12:55700899-55700971
Coord A exon
NA
Coord C2 exon
chr12:55700262-55700393
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TAACAGGTCTGTCCTTGCAGGCA
3' ss Score
7.47
Exon sequences
Seq C1 exon
GGCACAGCTGCCGCCTTCTCCCCTGATAGCCACTACCTCCTCTTTGGGGCCCCAGGAACCTATAATTGGAAGG
Seq A exon
NA
Seq C2 exon
GCACGGCCAGGGTGGAGCTCTGTGCACAGGGCTCAGCGGACCTGGCACACCTGGACGACGGTCCCTACGAGGCGGGGGGAGAGAAGGAGCAGGACCCCCGCCTCATCCCGGTCCCTGCCAACAGCTACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135424-19-20,23-20-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.329
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTGCCGCCTTCTC
R:
AAAGTAGCTGTTGGCAGGGAC
Band lengths:
202-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains