HsaALTD1020903-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000135424 | ITGA7
Description
integrin subunit alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr12:55700262-55700971:-
Coord C1 exon
chr12:55700899-55700971
Coord A exon
chr12:55700566-55700898
Coord C2 exon
chr12:55700262-55700393
Length
333 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TAACAGGTCTGTCCTTGCAGGCA
3' ss Score
7.47
Exon sequences
Seq C1 exon
GGCACAGCTGCCGCCTTCTCCCCTGATAGCCACTACCTCCTCTTTGGGGCCCCAGGAACCTATAATTGGAAGG
Seq A exon
GTGAGTCACTCCTCGGGAAGGGGAGAAGGGGACCAAAACCTCCTCTTACCTCAGAGACAGGGTTGGGGATGGCACATGGCCAAGCATGACCACATGTGCACTGCTGTATGGCCCCAGGGCACTGCCATGCCTTCCACCCCATTGAGCTAGTGCACACATGAATGGGGGGTGCCTCCTTTCCCTCGCACGGCCAAGTGTTCCTCAACATGCTGGCATGGGCCCCAAGTGCACGCTGGGCCTGCAGCTGGGGCCTGCATGCTCCAACACACTAGCCCACACCTCATCACTGCCATTCCCGTCTCCGCACGCTGCTGCTGGCTGAGCTGACACTCG
Seq C2 exon
GCACGGCCAGGGTGGAGCTCTGTGCACAGGGCTCAGCGGACCTGGCACACCTGGACGACGGTCCCTACGAGGCGGGGGGAGAGAAGGAGCAGGACCCCCGCCTCATCCCGGTCCCTGCCAACAGCTACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135424-19-20,23-20-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.329
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTGCCGCCTTCTC
R:
AAAGTAGCTGTTGGCAGGGAC
Band lengths:
202-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains