MmuEX1015459 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146158887-146166671:-
Coord C1 exon
chr6:146166579-146166671
Coord A exon
chr6:146160077-146160146
Coord C2 exon
chr6:146158887-146159017
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGATCTGTCACCACCACAAGACT
3' ss Score
-0.15
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTAATCACGGGGTTCCCACTATGACCTTATCTTCCATGATGGAAACCTGCCAGAAGGAAAACTGCTCACCCACGATCCCCTCTTCCAACACAG
Seq A exon
ACTGCCCCAGTACCCGTTGCTCCTTCCTCCCCAAATTCCTTCACATTTCTAAATCAGAATCAGCTTGAAG
Seq C2 exon
CCGGCGAGGAAGGTGAGGATGGCATAGAAAGGACATGTGATACCCTGCTCATGTGCATTGTCACCGTGCTGAACCAGGGCCTCAGGAATGGCGGCGGAGTTGGGGATGTGCTGAGACGACCCTCGAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(13.7=100)
A:
PF0052026=Ion_trans=PD(0.1=0.0)
C2:
PF0052026=Ion_trans=FE(18.9=100)
Main Inclusion Isoform:
ENSMUST00000053273fB11683
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGGGGTTCCCACTATGA
R:
CTGGTTCAGCACGGTGACAAT
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types