RnoEX0003589 @ rn6
Exon Skipping
Gene
ENSRNOG00000053339 | AABR07062512.1
Description
NA
Coordinates
chr4:180474236-180481951:-
Coord C1 exon
chr4:180481859-180481951
Coord A exon
chr4:180475516-180475597
Coord C2 exon
chr4:180474236-180474366
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCATCTGTCACCACCACAAGGCT
3' ss Score
2.11
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTAACGACGGGGTTCCCACTATGACCTTAACTTCCATGCTGGGAACCTGCCCTAAGGAAAACTGCTCACCCACGATCCCCTCTTCGAATGCAG
Seq A exon
GCTACTCCAGTACCCATTGCTCCTTCCTCCCCAAATTCCTTCAGATTTCTAAATCAGAATTGCCCATGGGTTCAGCTTGGAG
Seq C2 exon
CCGGTGAGGGAGGTGAGGACGGCATCGAGAGGACCTGTGACACCCTGCTCATGTGCATTGTCACCGTGCTGAACCAGGGCCTCAGGAATGGTGGCGGAGTTGGTGACGTGCTGAGACGACCCTCGAAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053339_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(13.7=100)
A:
NO
C2:
PF0052026=Ion_trans=FE(18.9=100)
Main Inclusion Isoform:
ENSRNOT00000086465fB177
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAAACTGCTCACCCACG
R:
ATCCTTCGAGGGTCGTCTCAG
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]