MmuEX1016805 @ mm10
Exon Skipping
Gene
ENSMUSG00000038696 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:MGI Symbol;Acc:MGI:2444554]
Coordinates
chr2:34518673-34533897:+
Coord C1 exon
chr2:34518673-34518849
Coord A exon
chr2:34524262-34524423
Coord C2 exon
chr2:34533788-34533897
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCTTCCCTCATCAGACA
3' ss Score
8.37
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
TGACAATGTCAGTGCCTACTGCCTGCATATTGCTGAGGATGATGGGGAGGTCGACACGGATTTTCCGCCACTGGATTCCAATGAGCCCATTCATAAGTTTGGCTTCAGTACTTTGGCCCTGGTTGAAAAATACTCCTCTCCTGGTCTGACCTCCAAAGAGTCGCTCTTTGTTCGAAT
Seq A exon
ACAGAAATGAAAAGAAATAAACCTATTGAGTAAACCAGAGATTATCAGTAGTAAAATAGACTTCATTTATTTGAAGAAAAAAAAAAAAACTTAAGTGGATCCCTGCTGGAAAAAATGTTCTGTGGAAATGAATGTGGAGTTGGATGCCTTCTAATACGCCTT
Seq C2 exon
AAATGCTGCTCATGGATTCTCCCTTATCCAAGTAGACAACACAAAGGTCACCATGAAGGAGATCTTGCTCAAGGCAGTGAAAAGAAGAAAAGGATCCCAGAAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038696_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(20.4=100)
A:
PF054227=SIN1=PD(0.7=50.0)
C2:
PF054227=SIN1=FE(12.1=100),PF054227=SIN1=PU(1.6=5.3)
Main Inclusion Isoform:
ENSMUST00000147337fB12552
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCCTACTGCCTGCATAT
R:
GCCTTGAGCAAGATCTCCTTCA
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types