Special

MmuEX0027865 @ mm10

Exon Skipping

Gene
ENSMUSG00000038696 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:MGI Symbol;Acc:MGI:2444554]
Coordinates
chr2:34497701-34533897:+
Coord C1 exon
chr2:34497701-34497873
Coord A exon
chr2:34518673-34518849
Coord C2 exon
chr2:34533788-34533897
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTTTATGGTTTTGTTTTCAGTGA
3' ss Score
8.65
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGTCATGTGGGTACAACTGCAACTAAGAAGATCGACGTCTACCTCCCCCTGCACTCCAGCCAGGACAGACTGCTGCCAATGACCGTGGTGACCATGGCCAGCGCCAGGGTGCAGGACCTCATCGGGCTCATCTGTTGGCAGTACACGAGTGAAGGACGGGAGCCGAAGCTCAA
Seq A exon
TGACAATGTCAGTGCCTACTGCCTGCATATTGCTGAGGATGATGGGGAGGTCGACACGGATTTTCCGCCACTGGATTCCAATGAGCCCATTCATAAGTTTGGCTTCAGTACTTTGGCCCTGGTTGAAAAATACTCCTCTCCTGGTCTGACCTCCAAAGAGTCGCTCTTTGTTCGAAT
Seq C2 exon
AAATGCTGCTCATGGATTCTCCCTTATCCAAGTAGACAACACAAAGGTCACCATGAAGGAGATCTTGCTCAAGGCAGTGAAAAGAAGAAAAGGATCCCAGAAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038696_MULTIEX3-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.002 A=0.117 C2=0.048
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF054227=SIN1=PU(10.7=96.9)

							
A:
PF054227=SIN1=FE(20.4=100)

							
C2:
PF054227=SIN1=FE(12.1=100),PF054227=SIN1=PU(1.6=5.3)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000108751





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000108748, ENSMUSP00000108749, ENSMUSP00000116494, ENSMUSP00000123301
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr9:125559633-125559809 
HIGH PSI
HsaEX0037814
(MAPKAP1)
Human
(hg19)
chr9:128321912-128322088 
HIGH PSI
HsaEX0037814
(MAPKAP1)
Rat
(rn6)
chr3:13587930-13588106 
HIGH PSI
RnoEX0052613
(Mapkap1)
Cow
(bosTau6)
chr11:96386984-96387160 
HIGH PSI
BtaEX6046172
(MAPKAP1)
Chicken
(galGal4)
chr17:9686189-9686365 
HIGH PSI
GgaEX1035039
(MAPKAP1)
Chicken
(galGal3)
chr17:10408842-10409018 
HIGH PSI
GgaEX1035039
(SIN1_CHICK)
Zebrafish
(danRer10)
chr5:4961350-4961526 
HIGH PSI
DreEX6009093
(mapkap1)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGTCATGTGGGTACAACTGCA

				
R: 
GCCTTGAGCAAGATCTCCTTCA

				
Band lengths: 
248-425

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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