BtaEX6046172 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010271 | MAPKAP1
Description
Bos taurus mitogen-activated protein kinase associated protein 1 (MAPKAP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001081603]
Coordinates
chr11:96372550-96402030:-
Coord C1 exon
chr11:96401858-96402030
Coord A exon
chr11:96386984-96387160
Coord C2 exon
chr11:96372550-96372659
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGATTTTCCCTACAGTGA
3' ss Score
9.24
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGTCACGTAGGCACAACAGCGACCAAGAAGATCGATGTCTACCTCCCCCTGCACTCGAGCCAGGACAGACTGCTGCCAATGACGGTGGTGACCATGGCCAGCGCCAGGGTGCAGGACCTCATCGGGCTCATCTGCTGGCAGTACACCAGCGAAGGACGGGAGCCGAAGCTCAA
Seq A exon
TGACAATGTCAGTGCCTACTGCCTGCATATTGCCGAGGATGACGGGGAGGTTGACACAGACTTTCCCCCACTGGATTCCAACGAGCCCATTCATAAGTTTGGCTTCAGTACTTTGGCCCTGGTTGAAAAGTATTCATCTCCTGGTCTGACATCCAAAGAGTCGCTCTTTGTTCGAAT
Seq C2 exon
AAATGCTGCTCATGGATTCTCCCTTATTCAGGTGGACAACACAAAGGTCACCATGAAAGAAATCTTGCTAAAGGCAGTGAAGCGAAGAAAAGGATCCCAGAAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010271-'26-22,'26-16,27-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.117 C2=0.053
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(12.3=100)
A:
PF054227=SIN1=FE(12.7=100)
C2:
PF054227=SIN1=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAACAGCGACCAAGAAGA
R:
CCTTTTCTTCGCTTCACTGCC
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]