HsaEX0037814 @ hg19
Exon Skipping
Gene
ENSG00000119487 | MAPKAP1
Description
mitogen-activated protein kinase associated protein 1 [Source:HGNC Symbol;Acc:18752]
Coordinates
chr9:128305338-128348006:-
Coord C1 exon
chr9:128347834-128348006
Coord A exon
chr9:128321912-128322088
Coord C2 exon
chr9:128305338-128305447
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGGTTTTCCTTTCAGTGA
3' ss Score
10.51
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGTCATGTAGGTACAACAGCAACCAAGAAGATCGATGTCTACCTCCCTCTGCACTCGAGCCAGGACAGACTGCTGCCAATGACCGTGGTGACAATGGCCAGCGCCAGGGTGCAGGACCTGATCGGGCTCATCTGCTGGCAGTATACAAGCGAAGGACGGGAGCCGAAGCTCAA
Seq A exon
TGACAATGTCAGTGCCTACTGCCTGCATATTGCTGAGGATGATGGGGAGGTGGACACCGATTTCCCCCCGCTGGATTCCAATGAGCCCATTCATAAGTTTGGCTTCAGTACTTTGGCCCTGGTTGAAAAGTACTCATCTCCTGGTCTGACATCCAAAGAGTCACTCTTTGTTCGAAT
Seq C2 exon
AAATGCTGCTCATGGATTCTCCCTTATTCAGGTGGACAACACAAAGGTTACCATGAAGGAAATCTTACTGAAGGCAGTGAAGCGAAGAAAAGGATCCCAGAAAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119487_MULTIEX2-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.108 C2=0.058
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(58.2=100),PF0220413=VPS9=FE(52.8=100)
A:
PF054227=SIN1=FE(12.7=100)
C2:
PF054227=SIN1=PD(8.6=7.9),PF054227=SIN1=PU(86.0=97.4),PF054227=SIN1=PU(3.1=10.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGTCTACCTCCCTCTGCA
R:
TCTGGGATCCTTTTCTTCGCT
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)