DreEX6009093 @ danRer10
Exon Skipping
Gene
ENSDARG00000091777 | mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-041111-178]
Coordinates
chr5:4947043-4972907:+
Coord C1 exon
chr5:4947043-4947215
Coord A exon
chr5:4961350-4961526
Coord C2 exon
chr5:4972798-4972907
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTTTGTTTCCGCAGTGA
3' ss Score
10.09
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GGCCATGTTGGTACAACGGCAACCAAAAAAATTGACGTCTACCTCTCAATGCAGTCGACCCAAGAAAAGCTTCACCCCATGACAGTGGTCACCATGGCTAATGCGCGGGTCCACGATCTTATCGGGCTGATCTGCTGGCAGTACACCTGTGAAGGCCGTGAACCCAAGCTCAC
Seq A exon
TGAAAATGTCAACACCTACTGTCTTCACATCGCTGAGGATGACGGGGAAGTGGACACAGATTTTCCTCCGCTCGACTCCAATGAGCCCATACACAAGTTTGGCTTCAGCACGCTGGCGCTGGTGGAGAAGTACTCGTCTCCTGGACTCGGACCCAAACAGTCGCTCTTTGTTCGAAT
Seq C2 exon
AAACGCAGCTCATGGTTTCTCCTTGATCCCGGTGGACAGTCTGAAAGTGACCATGAAGGATATCCTGCAGAAAGCCCTCAAGAAGAGGAAGGGCTCCCAGAAAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091777-'6-9,'6-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.117 C2=0.053
Domain overlap (PFAM):
C1:
PF054227=SIN1=PD(26.8=96.6)
A:
PF054227=SIN1=FE(12.6=100)
C2:
PF054227=SIN1=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTCAATGCAGTCGACCC
R:
TGATCCTTTCTGGGAGCCCTT
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]