GgaEX1035039 @ galGal4
Exon Skipping
Gene
ENSGALG00000000977 | MAPKAP1
Description
Target of rapamycin complex 2 subunit MAPKAP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9W6S3]
Coordinates
chr17:9678680-9690417:-
Coord C1 exon
chr17:9690245-9690417
Coord A exon
chr17:9686189-9686365
Coord C2 exon
chr17:9678680-9678789
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTGCTTTGTTTCAGCGA
3' ss Score
9.78
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGCCATGTTGGTACCACGGCAACCAAAAAAATTGATGTCTACCTCCCACTGCATGCAAACCAAGACAAACTGCAGCCCATGACAGTTGTGACGATAGCAAATGCCAAGGTGCATGACCTGATTGGACTAATATGCTGGCAATATACAAGTGAGGGACGGGAACCAAAACTGAA
Seq A exon
CGACAACGTCAGTGCCTACTGCCTCCATATTGCTGAGGACGATGGTGAGGTTGACACAGATTTCCCACCCTTGGATTCCAACGAGCCCATTCACAAGTTTGGCTTCAGCACTCTGGCGTTGGTTGAAAAGTACTCCTCTCCCGGCCTGGCAGCAAAACAGTCTCTCTTTGTCCGAAT
Seq C2 exon
AAACGCTGCTCATGGATTCTCACTTATTCAGGTGGACAGTATGAAGGTCACCATGAAAGATATCTTGCAAAAAGCCTTAAAGAGAAGGAAAGGATCACAGAGAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000977_MULTIEX1-5/7=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.117 C2=0.184
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(12.3=100)
A:
PF054227=SIN1=FE(12.7=100)
C2:
PF054227=SIN1=FE(8.0=100)
Main Skipping Isoform:
ENSGALT00000001443fB9221
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCCCACTGCATGCAAA
R:
AGCCTCTCTGTGATCCTTTCCT
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]