GgaEX1035039 @ galGal3
Exon Skipping
Gene
ENSGALG00000000977 | SIN1_CHICK
Description
NA
Coordinates
chr17:10401331-10413070:-
Coord C1 exon
chr17:10412898-10413070
Coord A exon
chr17:10408842-10409018
Coord C2 exon
chr17:10401331-10401440
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTGCTTTGTTTCAGCGA
3' ss Score
9.78
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGCCATGTTGGTACCACGGCAACCAAAAAAATTGATGTCTACCTCCCACTGCATGCAAACCAAGACAAACTGCAGCCCATGACAGTTGTGACGATAGCAAATGCCAAGGTGCATGACCTGATTGGACTAATATGCTGGCAATATACAAGTGAGGGACGGGAACCAAAACTGAA
Seq A exon
CGACAACGTCAGTGCCTACTGCCTCCATATTGCTGAGGACGATGGTGAGGTTGACACAGATTTCCCACCCTTGGATTCCAACGAGCCCATTCACAAGTTTGGCTTCAGCACTCTGGCGTTGGTTGAAAAGTACTCCTCTCCCGGCCTGGCAGCAAAACAGTCTCTCTTTGTCCGAAT
Seq C2 exon
AAACGCTGCTCATGGATTCTCACTTATTCAGGTGGACAGTATGAAGGTCACCATGAAAGATATCTTGCAAAAAGCCTTAAAGAGAAGGAAAGGATCACAGAGAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000977-'13-16,'13-14,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.117 C2=0.193
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(12.3=100)
A:
PF054227=SIN1=FE(12.7=100)
C2:
PF054227=SIN1=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCCCACTGCATGCAAA
R:
AGCCTCTCTGTGATCCTTTCCT
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]