RnoEX0052613 @ rn6
Exon Skipping
Gene
ENSRNOG00000017583 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:RGD Symbol;Acc:1305363]
Coordinates
chr3:13571653-13602354:+
Coord C1 exon
chr3:13571653-13571825
Coord A exon
chr3:13587930-13588106
Coord C2 exon
chr3:13602245-13602354
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGGTTTTGCTTTCAGTGA
3' ss Score
9.62
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGTCATGTGGGTACAACTGCAACGAAGAAGATCGACGTCTACCTCCCCCTGCACTCAAGCCAGGACAGACTGCTGCCAATGACTGTGGTGACCATGGCCAGCGCCAGGGTGCAGGACCTCATCGGGCTCATCTGTTGGCAGTACACGAGTGAAGGACGGGAGCCAAAGCTCAA
Seq A exon
TGACAACGTCAGTGCCTACTGCCTGCATATTGCTGAGGATGATGGGGAGGTGGACACGGATTTCCCACCGCTGGATTCCAATGAACCCATTCATAAGTTTGGCTTCAGTACTTTGGCCCTGGTTGAAAAGTACTCTTCCCCTGGTCTGACCTCCAAAGAGTCGCTCTTTGTTCGAAT
Seq C2 exon
AAATGCTGCCCATGGGTTCTCCCTCATCCAGGTGGACAACACGAAGGTCACCATGAAGGAGATCTTACTCAAGGCACTGAAACGAAGAAAAGGGTCCCAGAAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017583_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.117 C2=0.026
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(12.3=100)
A:
PF054227=SIN1=FE(12.7=100)
C2:
PF054227=SIN1=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCGACGTCTACCTCCCC
R:
TCTGGGACCCTTTTCTTCGTT
Band lengths:
247-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]