MmuEX1016907 @ mm10
Exon Skipping
Gene
ENSMUSG00000027763 | Mbnl1
Description
muscleblind-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1928482]
Coordinates
chr3:60528756-60595764:+
Coord C1 exon
chr3:60528756-60529804
Coord A exon
chr3:60546946-60547494
Coord C2 exon
chr3:60595594-60595764
Length
549 bp
Sequences
Splice sites
3' ss Seq
TCCCTCACTTTTCTTTCTAGAAC
3' ss Score
10.35
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CAAAACCTCTTTGAATTAACAGTTTCATGCTGTGAATTTCTAGCGGAGGTCTTTCCCTTTATATTGAAGTCACACTTTTCCATGTGCCGTTAAATCGGGGACGGGGGAAGCAGCCTTTCGGACATTTTCACAGTTATCTCACACTCTGAGTTTTATCAGTTCCTATTTTGTTTAGTTTTTGTCTTTTGTTTTGGTTGCTGATTTTTTTTCTATTTTTCTTTTTCTTTTCTTTTTGTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTGGAGAGGGGTTGGATTTGTTGGTTTCATTAAACATTTAACTACCTGTAAAATATAAACATGGCTGTTAGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTTCAAAGGGGGACTTGCTCACGACCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCTGCTTTGATTCACTGAAA
Seq A exon
AACTAGATCTCCACCCCTTCATCCATGTTTTGGCTTTCTGTGGGATGCGTGAATGGCTGCCCCCTTGTATTTTGTTGCACTTCTCCATTGCTTCTTGTGTTCTGGTGGGGACCTTGGTGATTCTTCTCAATTGCTACCTGAGCTCTGTGCTGGTTGCTGCTCATCTCCCAGGGTCTTGTGCTGGCTGGTCATGTCTCTACCTCCTTGGCACTGCCCCTTGGCAGAAGCGTGGTCCCTTGTTGGCTGCGTCTAAACCCTTGTGAGGGTGGGGAATATTCCTCCCCCTGCTGCTACGATTGAGCTCTGTGCTGGGTACCACAGAGTCCTCTACACTTGCTTTCAGTTGCTAAGGCATCCCGAGCTTTGGCTGTGGCTCAGTGGTCCTGCTATCCAAACCCTAAAACTTTCCTAGCCTCGACACTCAGTGGTAGCAGCAGGTGTTGGGATTTCTCCAACTTCTAAGGCCTTGGGAGGAAGAGAGTGGCTGTTGACACAGACCTCAAGGATTTTCAGAGTACACCAGGAAACTTCTCCAGAAGATATGTAAAG
Seq C2 exon
GGTCGTTGCTCCAGAGAGAACTGCAAATATCTTCATCCACCCCCACACTTAAAAACACAGTTAGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATGGCCATGCTGGCCCAGCAAATGCAGTTAGCCAATGCCATGATGCCCGGTGCCCCGTTGCAGCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027763_MULTIEX1-4/14=3-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=0.129 A=0.000 C2=0.285
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064219=zf-CCCH=PU(7.7=3.5)
Main Inclusion Isoform:
ENSMUST00000099087fB12626
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGGGTTGGATTTGTTGG
R:
CCAGCATGGCCATGTTCTTCT
Band lengths:
347-896
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types