MmuEX1017200 @ mm10
Exon Skipping
Gene
ENSMUSG00000097652 | Mhrt
Description
myosin heavy chain associated RNA transcript [Source:MGI Symbol;Acc:MGI:3642848]
Coordinates
chr14:54968787-54973526:+
Coord C1 exon
chr14:54968787-54968847
Coord A exon
chr14:54972765-54972912
Coord C2 exon
chr14:54973461-54973526
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGCATTGCGCTTTTGCTCAGCCT
3' ss Score
3.34
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
AGCCCTACAGTCTGATGAACATTCTAGAGTATGTGGACACAGATGGACGCTCTGGCCACAG
Seq A exon
CCTCCAGCTCATTCTCCAGCTCCCGGACCCGGGCCTCCAGCTTCTGCAGCTGCTTCTTGCCGCCCTTGAGGGCGATCTGCTCTGCCTCGTCCAGACGGTGCTGCAAGTCCTTGATGGTCTGCTCCATGTTCTTCTTCATGCGCTCCAG
Seq C2 exon
GTCGTCATTGGCACGGACAGCATCATCCAGCTGGATTTGAGTGTCCTGAGGATCAGAAAAATGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097652_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTACAGTCTGATGAACA
R:
TTTTTCTGATCCTCAGGACACTCA
Band lengths:
122-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types