RnoEX0004460 @ rn6
Exon Skipping
Gene
ENSRNOG00000046229 | AC130940.1
Description
NA
Coordinates
chr15:33632416-33645355:+
Coord C1 exon
chr15:33632416-33632435
Coord A exon
chr15:33636688-33636835
Coord C2 exon
chr15:33645217-33645355
Length
148 bp
Sequences
Splice sites
3' ss Seq
CGCATTGCGCTTCTGCTCAGCCT
3' ss Score
3.26
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GATGGACGCTCTGGCCACAG
Seq A exon
CCTCCAGCTCATTCTCCAGCTCCCGGACCCGGGCCTCCAGCTTCTGCAGCTGCTTCTTGCCACCCTTGAGGGCGATCTGCTCTGCCTCGTCCAGCCGGTGCTGCAGGTCCTTGATGGTCTGCTCCATGTTCTTCTTCATGCGCTCCAG
Seq C2 exon
GTCCATGATGCTCTCCTGGGTCAGCTTCAGGTCACCCTCCAGCTTCCGCTTTGCTCGCTCCAGGTCCATGCGCACCTTCTTCTCCTGCTCCAGGGATCCCTCCAGCTGGCAGAGAGAAGAGCCAGCTATGAACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046229_MULTIEX1-2/4=C1-C2
Average complexity
ME(2-3[97=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSRNOT00000068212fB263
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]