MmuEX1017696 @ mm10
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108094125-108099186:+
Coord C1 exon
chr5:108094125-108094248
Coord A exon
chr5:108095201-108095234
Coord C2 exon
chr5:108099119-108099186
Length
34 bp
Sequences
Splice sites
3' ss Seq
TATTCTGAATATTCTTTCAGATA
3' ss Score
7.13
5' ss Seq
ATGGTATAC
5' ss Score
2.73
Exon sequences
Seq C1 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAG
Seq A exon
ATACGTAACACTTTTATTGAATGCTGTGGACATG
Seq C2 exon
CTGGCAGACACACCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267-'39-38,'39-37,40-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000081567fB13124
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTTACAACCTAAGTGTTATTCA
R:
CAGATTTGGGTGTGTCTGCCA
Band lengths:
127-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types