RnoEX0056251 @ rn6
Exon Skipping
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2667660-2675636:-
Coord C1 exon
chr14:2675513-2675636
Coord A exon
chr14:2672059-2672187
Coord C2 exon
chr14:2667660-2667727
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTAAATATTGTTGTTTCAGATG
3' ss Score
8.05
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAGTACTTTGACTCTGAACTTGAGCTTATGACATACATTAATGACAACTGGGACAGATTGCACCCTGGAGAG
Seq A exon
ATGTGCAACCCTGTTTTATAGAATGCTGTGGACATGGTATACACAAATTATAAACTGACTTCAAATAAGATACTGAAATGCAAACAATTAAGCCAAAGTTAAATGGATTTATAGCTGACTTGAAAAACA
Seq C2 exon
CTGGCAGACACGCCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075-'19-19,'19-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000000086fB9074
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACCTATGCCTTTACAACCT
R:
GGTCTTGTAATCATTTAATGCCTCCA
Band lengths:
180-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]