MmuEX1017905 @ mm10
Exon Skipping
Gene
ENSMUSG00000030739 | Myh14
Description
myosin, heavy polypeptide 14 [Source:MGI Symbol;Acc:MGI:1919210]
Coordinates
chr7:44652431-44654054:-
Coord C1 exon
chr7:44653956-44654054
Coord A exon
chr7:44653355-44653547
Coord C2 exon
chr7:44652431-44652571
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTTCTACCCTCTGCTTCCAGCTG
3' ss Score
10.14
5' ss Seq
GAGGTTGTG
5' ss Score
-2.93
Exon sequences
Seq C1 exon
ATCTGTTGGAGAAGTCCCGGGCCATCAGACAGGCCAAGGATGAATGCAGCTTCCATATCTTCTACCAGCTGCTAGGGGGCGCTGGGGAGCAGCTAAAAG
Seq A exon
CTGCCTTCTGGCTTTCGCTCCTGCCTGCGGCATCTGCTCTGTTCCTGCACCCCTGTTCCTCCTGGCCCTATGGTGGCTCTGCCTTGTTGTGGCCTCTCGCAATTCCATGCTTCCAGTTGACCTTACTGTGTGCTGTTGCGCCTGCAAGCTGCCTTCTGTTGCGGTCCCTGCCGGCTCGGAGGCTATGCCAGAG
Seq C2 exon
CTGACCTCCTTCTGGAGCCCTGTTCCCATTATCGCTTCCTGACCAATGGGCCCTCATCGTCCCCGGGCCAGGAGCGTGAGTTATTCCAGGAGACCCTGGAGTCCCTGCGTGTGCTGGGCCTCCTCCCAGAAGAGATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030739-'22-20,'22-19,23-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(13.6=100)
A:
PF0006316=Myosin_head=PD(9.5=35.4)
C2:
PF0006316=Myosin_head=PU(9.6=97.8)
Main Inclusion Isoform:
ENSMUST00000048102fB13224
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTTGGAGAAGTCCCGGG
R:
TGATCTCTTCTGGGAGGAGGC
Band lengths:
237-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types