RnoEX0057021 @ rn6
Exon Skipping
Gene
ENSRNOG00000020014 | Myh14
Description
myosin heavy chain 14 [Source:RGD Symbol;Acc:1306821]
Coordinates
chr1:100651856-100653104:-
Coord C1 exon
chr1:100653006-100653104
Coord A exon
chr1:100652566-100652762
Coord C2 exon
chr1:100651856-100651996
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTTCTACCCTCTGCTTCCAGCTG
3' ss Score
10.14
5' ss Seq
GAGGTTGTG
5' ss Score
-2.93
Exon sequences
Seq C1 exon
ATCTGCTGGAGAAGTCCCGGGCCATCAGACAGGCCAAGGACGAATGCAGCTTCCATATCTTCTACCAGCTGCTAGGGGGCGCTGGGGAGCAGCTAAAAG
Seq A exon
CTGCCTTCTGGCTTTCGCTCCTGCCCGTGGCATCTGTCTGCTCGGTTCCTGCACCCCTGTTCCTCCTGGCCCTATGGTGGCTCTGCCTTGCTGTGGCCTCTCACAACTCCATGCTTCCAGCTGATCTTACTGTGTACTGTGGTGCCTGCAAGCTGCCTTCTGCTGTGGTTCCTGCCCGCTCGGAGGCTATGCCAGAG
Seq C2 exon
CTGACCTCCTTCTGGAGCCCTACTCCCATTACCGCTTCCTGACCAACGGGCCCTCATCATCCCCCGGCCAGGAGCGGGAGTTATTCCAGGAGACCCTGGAGTCCCTGCGAGTGCTGGGCCTCCTCCCAGAAGAGATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020014-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.128
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.3=100)
A:
PF0006316=Myosin_head=PD(5.2=18.2)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
ENSRNOT00000027132fB9197
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTGGAGAAGTCCCGG
R:
TGATCTCTTCTGGGAGGAGGC
Band lengths:
237-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]