MmuEX1018202 @ mm10
Exon Skipping
Gene
ENSMUSG00000002341 | Ncan
Description
neurocan [Source:MGI Symbol;Acc:MGI:104694]
Coordinates
chr8:70109941-70112187:-
Coord C1 exon
chr8:70111894-70112187
Coord A exon
chr8:70111462-70111555
Coord C2 exon
chr8:70109941-70110537
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATGGGCGTTTCTCCTTCCAGACC
3' ss Score
10.31
5' ss Seq
CCAGTAGGT
5' ss Score
5.41
Exon sequences
Seq C1 exon
GTGAAGTCTTTTACGTGGGCCCGGCCCGCCGACTGACCCTGGCGGGCGCGCGGGCACAATGTCAGCGGCAGGGTGCAGCGCTGGCCTCGGTGGGGCAGTTGCACCTGGCCTGGCACGAGGGCCTGGACCAGTGCGACCCGGGCTGGCTGGCAGACGGCAGCGTGCGCTACCCCATCCAGACTCCGCGCCGGCGTTGCGGGGGCCCCGCCCCAGGTGTGCGCACTGTGTACCGCTTCGCCAACCGCACCGGCTTTCCTGCGCCAGGAGCACGCTTCGACGCCTACTGCTTCCGAG
Seq A exon
ACCACATCCCATAATCTGCATTGGGCGGAACAAACCACATCCCACTATTGGGTTCCCTGGAATTAGGAGCATATGAAGACCACATGCCCTGCCA
Seq C2 exon
CTCATCACCATACAGCACAACATGGAGATTCTGAGATCCCCTCATCTGGAGATGAGGGGGAGATTGTGTCAGCAGAGGGGCCTCCAGGCCGAGAACTAAAGCCCAGCTTGGGGGAACAGGAGGTGATAGCACCTGACTTCCAGGAACCTCTCATGTCCAGTGGAGAAGGCGAACCCCCAGACTTGACTTGGACACAAGCACCTGAGGAGACCCTTGGTTCTACTCCAGGGGGTCCCACGCTGGCCTCATGGCCCTCTTCAGAAAAGTGGCTCTTTACGGGTGCCCCAAGCTCCATGGGTGTCTCCAGTCCCAGCGACATGGGAGTAGATATGGAAGCGACAACACCCTTGGGCACACAGGTAGCACCCACCCCCACGATGAGGAGGGGCCGCTTTAAAGGGTTGAATGGTCGACACTTCCAGCAGCAGGGCCCAGAAGACCAGCTGCCTGAGGTAGCAGAGCCCAGTGCCCAGCCTCCCACCCTGGGAGCTACTGCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002341-'10-8,'10-7,11-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.980
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000002412fB13411
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGACGCCTACTGCTTCC
R:
TGGACATGAGAGGTTCCTGGA
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types