MmuEX1018287 @ mm10
Exon Skipping
Gene
ENSMUSG00000022678 | Nde1
Description
nudE neurodevelopment protein 1 [Source:MGI Symbol;Acc:MGI:1914453]
Coordinates
chr16:14175291-14183612:+
Coord C1 exon
chr16:14175291-14175439
Coord A exon
chr16:14177338-14177452
Coord C2 exon
chr16:14183476-14183612
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTGCAAAAATTCCTTCACAGGAG
3' ss Score
5.79
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GAGAAGTTTGAGATGCAGCACTCAGAGGGTTACCGGCAGATCTCAGCCTTGGAGGATGACCTGGCGCAGACGAAAGCCATTAAAGACCAACTGCAGAAATACATTAGGGAACTGGAACAAGCCAATGATGACCTGGAAAGAGCCAAACG
Seq A exon
GAGGAAGACTTAAACAACTGCTACCTCTCCTAAGGTCCAAACAAAAGCCAAGGCGTGATTCTTCTAAGTTCACTCTGGGGAAACAGAGTTCACTGGGCTTCCTTACGGAGCATAG
Seq C2 exon
AGCCACAATCATGTCCCTGGAAGACTTTGAGCAGCGTTTGAATCAAGCCATTGAAAGAAATGCCTTCCTAGAGAGTGAGCTGGATGAGAAGGAGAATCTTCTAGAATCTGTGCAGAGGCTGAAGGATGAAGCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022678_MULTIEX1-3/5=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=1.000 C2=0.478
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PD(1.8=2.0)
A:
NO
C2:
PF079267=TPR_MLP1_2=PD(3.8=30.0),PF040127=PspA_IM30=PD(11.6=80.0),PF088265=DMPK_coil=PD(1.8=10.0),PF0017016=bZIP_1=PD(6.4=30.0)
Main Inclusion Isoform:
ENSMUST00000023359fB13468
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGTTACCGGCAGATCTC
R:
CATCCTTCAGCCTCTGCACAG
Band lengths:
254-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types