MmuEX0031223 @ mm10

Exon Skipping

Gene

ENSMUSG00000022678 | Nde1

Description

nudE neurodevelopment protein 1 [Source:MGI Symbol;Acc:MGI:1914453]

Coordinates

chr16:14170338-14183612:+

Coord C1 exon

chr16:14170338-14170491

Coord A exon

chr16:14175291-14175439

Coord C2 exon

chr16:14183476-14183612

Length

149 bp

Sequences

Splice sites

3' ss Seq

ACTTCTGGTCTGTTCTGCAGGAG

3' ss Score

9.45

5' ss Seq

ACGGTAGGC

5' ss Score

8.81

Exon sequences

Seq C1 exon

GGCAGAGAATACTCAGGAAGAACTCAGAGAGTTCCAGGAAGGAAGCCGAGAATACGAAGCTGAATTGGAGGCTCAGCTGCAGCAGATTGAAACCAGGAACCGGGACCTCTTGTCAGAGAATAACCGCCTTCGCATGGAGCTGGAGTCTGTGAAG

Seq A exon

GAGAAGTTTGAGATGCAGCACTCAGAGGGTTACCGGCAGATCTCAGCCTTGGAGGATGACCTGGCGCAGACGAAAGCCATTAAAGACCAACTGCAGAAATACATTAGGGAACTGGAACAAGCCAATGATGACCTGGAAAGAGCCAAACG

Seq C2 exon

AGCCACAATCATGTCCCTGGAAGACTTTGAGCAGCGTTTGAATCAAGCCATTGAAAGAAATGCCTTCCTAGAGAGTGAGCTGGATGAGAAGGAGAATCTTCTAGAATCTGTGCAGAGGCTGAAGGATGAAGCCCGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000022678_MULTIEX1-2/5=1-4

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available

Features

Disorder rate (Iupred):

C1=0.840 A=0.492 C2=0.478

Domain overlap (PFAM):

C1:

PF079267=TPR_MLP1_2=FE(63.8=100),PF040127=PspA_IM30=FE(73.9=100),PF088265=DMPK_coil=FE(89.5=100),PF0017016=bZIP_1=PU(89.4=80.8),PF075586=Shugoshin_N=WD(100=55.8)

A:

PF088265=DMPK_coil=PD(1.8=2.0)

C2:

PF079267=TPR_MLP1_2=PD(3.8=30.0),PF040127=PspA_IM30=PD(11.6=80.0),PF088265=DMPK_coil=PD(1.8=10.0),PF0017016=bZIP_1=PD(6.4=30.0)

Main Inclusion Isoform:

ENSMUSP00000023359