GgaEX1039134 @ galGal3
Exon Skipping
Gene
ENSGALG00000006500 | NDE1_CHICK
Description
NA
Coordinates
chr14:7613378-7616342:+
Coord C1 exon
chr14:7613378-7613531
Coord A exon
chr14:7615749-7615897
Coord C2 exon
chr14:7616206-7616342
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTGTCCTTGACTAGGAA
3' ss Score
8.91
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
TGCTGAGAATATACAGGAGGAACTGTGTGAATTCCAAGAAGGGAGCCGAGAATATGAAGCTGAACTGGAAACTCAGCTGCAGCAAACAGAGTCCAGAAACAGAGATCTTCTTTCAGAAAACAACCGTTTGCGAATAGAACTGGAGTCTGTTAAG
Seq A exon
GAAAAGTTTGAAATGCAGCATTCAGAATGGTACAGGCAAGTCTCTGCACTGGAAGATGACTTGGCACAGACAAAAGCTATTAAAGATCAACTTCAGAAATACATTCGAGAACTTGAGCAAGCAAATGATGACTTGGAAAGAGCAAAAAG
Seq C2 exon
AGCCGCTATAATGTCTCTTGAGGATTTTGAGCAGCGCCTAAACCAGGCTATTGAAAGAAATGCTTTTCTGGAGAGTGAGCTGGATGAGAAAGAAAACCTTCTGGAGTCTGTGCAACGTCTGAAAGATGAAGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006500-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.060 C2=0.213
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=FE(87.9=100)
A:
PF088265=DMPK_coil=PD(1.7=2.0)
C2:
PF048808=NUDE_C=PU(20.7=87.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGAAGGGAGCCGAGAAT
R:
CAGACGTTGCACAGACTCCAG
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]