DreEX6017862 @ danRer10
Exon Skipping
Gene
ENSDARG00000103902 | nde1
Description
nudE neurodevelopment protein 1 [Source:ZFIN;Acc:ZDB-GENE-050913-61]
Coordinates
chr3:36532594-36538549:+
Coord C1 exon
chr3:36532594-36532747
Coord A exon
chr3:36538188-36538336
Coord C2 exon
chr3:36538413-36538549
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTGTGATCTAACAGGAG
3' ss Score
9.31
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGCTGAGGAGGCACAGGAGGAGCTGCAGGAGTTTCAGCAGATGAGTCGAGACTATGAGGTGGAGCTGGAGACCGAGCTGAAGCAGTGTGACGCACGCAATCGGGAACTCCTTACAGCCAACAACAGACTCCGCATGGAGCTAGAAAACTACAAG
Seq A exon
GAGAAGTATGAAACGCAGCACTCAGAGGCAGTCAGGCAGATCTCGACTCTAGAAAGAGACCTGGCAGAGACCACAGCCATCAAGGACCAACTGCACAAGTATATCCGAGAGTTGGAGCAGTCCAATGATGACCTGGAAAGAGCTAAGAG
Seq C2 exon
GGCAACTATAATGTCACTTGAAGACTTTGAGCAGAGAATGAATCACGTTATAGAGAGAAATGCCTTCCTTGAGAGCGAGCTTGATGAAAAAGAGAATCTTCTAGAGTCAGTGCAGAGGTTAAAAGATGAAGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103902-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.640 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
PF065827=DUF1136=WD(100=46.0),PF151481=Apolipo_F=PU(31.6=86.0),PF0252012=DUF148=PU(44.9=80.0)
C2:
PF151481=Apolipo_F=FE(33.8=100),PF0252012=DUF148=FE(51.7=100),PF048808=NUDE_C=PU(24.3=87.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGGAGTTTCAGCAGAT
R:
ACCTCTGCACTGACTCTAGAAGA
Band lengths:
252-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]