BtaEX6108683 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015986 | NDE1
Description
Bos taurus nudE nuclear distribution gene E homolog 1 (A. nidulans) (NDE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100321]
Coordinates
chr25:14192108-14209773:+
Coord C1 exon
chr25:14192108-14192261
Coord A exon
chr25:14196508-14196656
Coord C2 exon
chr25:14209637-14209773
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTGGCGATTCTGTCCTTCAGGAG
3' ss Score
7.19
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
GGCAGAGAACACCCAAGAGGAGCTCCGGGAATTCCAGGAGGAAAGCCGGGAATACGAGGCGGAACTGGAGACACAGCTGCAACAAACTGAGAGCAAAAACAGGGACCTGCTGATGGAAAACAACCACCTTCGCATGGAGCTGGAGACCATCAAG
Seq A exon
GAGAAGTTTAAAACACAGCATTCTGAAGGCTACCGGCAGATCTCAGCCTTAGAGGATGACCTTGCCCAGACGAAAGCCATAAAAGATAAACTGCAGAAGTACATCAGAGAGCTGGAGCAAGCCAACGATGACCTGGAAAGAGCCAAACG
Seq C2 exon
GGCCACGATCATGTCACTGGAGGACTTTGAACAGCGTTTGAATCAAGCCATAGAAAGAAACGCCTTCCTGGAGAGCGAACTGGACGAGAAGGAGAATCTCCTGGAATCTGTTCAGCGACTGAAGGATGAAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015986-'1-5,'1-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=0.340 C2=0.511
Domain overlap (PFAM):
C1:
PF079267=TPR_MLP1_2=FE(65.4=100),PF040127=PspA_IM30=FE(71.8=100),PF063948=Pepsin-I3=PD(92.1=67.3),PF088265=DMPK_coil=FE(91.1=100)
A:
PF057016=WEMBL=FE(24.7=100)
C2:
PF057016=WEMBL=FE(23.2=100),PF048808=NUDE_C=PU(20.6=87.2)
Main Skipping Isoform:
ENSBTAT00000021265fB4629
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAAGCCGGGAATACGAG
R:
GGCTTCATCCTTCAGTCGCTG
Band lengths:
250-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]