MmuEX1018292 @ mm10
Exon Skipping
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25246332-25248054:-
Coord C1 exon
chr2:25247960-25248054
Coord A exon
chr2:25246680-25246805
Coord C2 exon
chr2:25246332-25246595
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACCTCGGTTCTGTCTGTCAGCTT
3' ss Score
7.64
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GAGCAGAAGGTATATGTGCAGCACCGGCTTCGAGAGCTGGGGCCACTTGTCTGGGAGCTGCTGGATGGCCAAGGTGCCTACTTCTACCTAGCAGG
Seq A exon
CTTGTGGAAAACAGGGACCAGACCAACACCACTCTTAGGCCTCAGATACCAAGAGTTGACATGCTGCGGGGACCCAAGTGAAGCTTACTTCCAGTGAGGTCAGCAAGCCGAAAGGGTTATCTAGAG
Seq C2 exon
TCATCCTGGAGTCTCCGTCTACGCATCCTGACCTCTGTTCTAGTGGTAACCTGGGACCTAATGACACCAGCTCTGTGTCTACTAGTTCACCCGGTGCTTCTCTGGGTCCTGAGCTCTTGGACCCACTGTGCCAGCTACCAGCAGATGGAGAGGATGATCTCAGGGCCCCTCTGGGTGCCAGAACTCCAGACAGTAAACCGGAACTGGAGGCCAGAGACCCATCCGCTGCCAGGGCCCTGGAGTCAACTGTGGAAGAGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(29.0=100)
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCAAGGTGCCTACTTC
R:
GCCTCCAGTTCCGGTTTACTG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types