MmuINT0106854 @ mm10
Intron Retention
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25247229-25248054:-
Coord C1 exon
chr2:25247960-25248054
Coord A exon
chr2:25247855-25247959
Coord C2 exon
chr2:25247229-25247854
Length
105 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TCTGAGGCCTGCCTTTCCAGCAA
3' ss Score
4.59
Exon sequences
Seq C1 exon
GAGCAGAAGGTATATGTGCAGCACCGGCTTCGAGAGCTGGGGCCACTTGTCTGGGAGCTGCTGGATGGCCAAGGTGCCTACTTCTACCTAGCAGG
Seq A exon
GTGAGCAAACTTGGGAATGTCGGGGGGTGGACCAGCCTTTAGGGAAGGGTAGTAGTAAGGGTTGGGAATCGGGATCACTGAGCTTTCTGAGGCCTGCCTTTCCAG
Seq C2 exon
CAATGCTAAATATTTGCCTACGGATGTTTCGGAAGCCCTTATGTCCATTTTTCAAGAAGAAGGACGACTCTCCACTGCAGATGCATCTGCCTACCTTGCTAGGCTCCAGCAGACACTGCGCTTCCAGACTGAAACCTGGGCCTGAGGAGCCACTTGCTAGCTCACACTCACATTAACAGCTGCATTGGGTAGCCTGCTGGAGTCTAGAAGGCCCATTGTTACCTCTTGCCTTCTAATCCCAGAACACTGGGTAGACCCACAGTTTCGCTTTTTTGGTCCAGCTGACCAGGAGGGCAGTCCTTGCGTACAGCCAAACTCAGTGGAACCCAGTGTCCCATACGTAGGCCCAGCCCCGGTGCAGCTAGAACTCCTGGTTTTCTCTCAGACCCCTTCATTCTGCCCCAAATCTGCATTTATAGTCCCTACCACCAAGGGCCTGCTAAGCCCTCCAAAGGACATAGAGCTGTGCGGGCTGCACTGCCCGTCTGACCCCGTGCTATTCCCATTAGTCCCATAACACCTGTGCAGCTCAGCTCAGTTGAAAAGCCACCAGGGACCAAGTCTCCTGAGCATTGGGAATGGGCAAATCTGTCTGTCTGCAGGTCCATAAACATGAGTTAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471:ENSMUST00000114349:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(29.0=100)
A:
NA
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCAAGGTGCCTACTTC
R:
CCTTCTAGACTCCAGCAGGCT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types