DreINT0103032 @ danRer10
Intron Retention
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31898010-31898585:+
Coord C1 exon
chr5:31898010-31898104
Coord A exon
chr5:31898105-31898237
Coord C2 exon
chr5:31898238-31898585
Length
133 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTCTTTTTTTTTTATTTAAGGAA
3' ss Score
9.63
Exon sequences
Seq C1 exon
GAGGATAAAGTCTATGTTCAGCATCGTGTGAAGGAACAAGGCAAACTGTTATGGGATCTGATAGCAAAGAAGAATGCGTTCTTTTACATAGCAGG
Seq A exon
GTAAGTCTTTTGCAATTGCAACATTAATAAATGTTCAGCCTTCTCTCTTTGGTTTGTTATAGAGCAATATTTCAGTGCTGTTCATATATGAGAAGCAGGACAGAAATGAGCAGCTCTTTTTTTTTTATTTAAG
Seq C2 exon
GAATGCCAAGCAGATGCCAACAAGCGTATGTGACGCACTGAAAGCAGTTTTCCAGAAAGAAGGTGGCATGTCTGAAAACCAGGCACAGGAGATGCTGGATGGCATGGAGAAAAATGGACGCTTTCAAAGTGAAACCTGGTCCTGATGTCTCAATTTAAACTGCAGCCTTGATGAGCAACATAGCCTTAAGAGTGAACCTAAGTTACATGCTGATTGGATTCAACCAAGTTTGAAAGGAGAATGTCAAGCCTCAATTGTGGGGTGCTTTTGATTTATATTTATGCATACGTGTTCAATCATACATTACCAGTTATATTCTTTTTAAAAAATAAATATTGAATGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429:ENSDART00000033545:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(29.0=100)
A:
NA
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTGAAGGAACAAGGCAA
R:
ATGTTGCTCATCAAGGCTGCA
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]