HsaINT0111729 @ hg19
Intron Retention
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140110546-140113813:+
Coord C1 exon
chr9:140110546-140110640
Coord A exon
chr9:140110641-140110723
Coord C2 exon
chr9:140110724-140113813
Length
83 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TCTGCGACCTGCCCCTCTAGCAA
3' ss Score
7.17
Exon sequences
Seq C1 exon
GAGCAGAAAGTATATGTGCAGCACCGGCTCCGGGAGCTGGGGTCGCTTGTGTGGGAACTGCTGGACCGCCAGGGTGCATACTTCTACCTGGCAGG
Seq A exon
GTGAGCTGGCCTGCGTGCAGCAGGAGTGGGCCCAGCCCCTGAGTGCCAGGCCTCATTGCGCCTTCTGCGACCTGCCCCTCTAG
Seq C2 exon
CAACGCCAAGTCCATGCCAGCGGACGTCTCGGAAGCCCTGATGTCCATCTTCCAGGAGGAGGGTGGACTCTGCAGCCCGGACGCAGCCGCGTATCTAGCCAGGCTCCAGCAGACACGGCGCTTCCAGACAGAGACGTGGGCCTGAGGCCCGCGGCTGCCCGTGCCCCCTCTGACAGCCATCCTCCTGGGAGCCCAGGAAGGCATCCACGAGGGAGCTCCTGGCCAGCAGCCGTCATCCTCTCGGACCAGCCAGCTGGTCCTCTGGGAACAGCCAGCTCCCGAGCACAGCCGCACTCCTGTTGACCCTGGATCCCACCCTTTGAGCCTGACCCCACTGCAGCCTCTGCCCAGCCAGCCCTGCGCTCCCCCACCCTGACAGTGAGCTGTGTCCTCGTCCCCCCACCCCCTTCCCAGTCAAGGTGGTGGCCTGGGCCGCTCCACCTCACCGGTGCAGTGACCCAGGACGGCATCAGCAGCCCAGTGAGCACCAGGGGTGGCATAGGGCACCCATGAGGCTGCGCTGCACTCCTCTGCCCTGGGGCCACCTCGGCTGCTGCAGCCTGCCCAGCAGCACATTCCAGTCACTGCCCCCGCACTCCCACAGGGCTCAGGCTGGGCTCAGAGGCCACTGAGATGCCAGCTCCTTGAGAGCAGTGGGGGTGTCCCAGGCCAGAGCAGCCTCTTCCTCTCCTGGTCCCAGAAAAACCCTTGCAGTAAATGGTGGCCTCTGGGTGGTTACTTCTAGCGCAGGCTTCCTTCCTTCCTCTAGCTCCTCCCGGTGCCCTGGGTGCTGGGTGCTGGATGGATGGGCGTCCTCTAGCTCCTCCCGGTGCCCTGGGTGCTGGGTGCTGGATGGGTGGGCGTCCTCTAGCTCCTCCCGGTGCCCTGGGTGCTGGGTGCTGGATGGGTGGGCGCCACGGTGCACCCTTGTTGGGCTGCCTGTGCCCGAGTGGCCTCTGCAGCTCTTATGTCTGCCTCTAATGGGATGTGCGCCCTGACTGCCTCGTTCTTAAGGGCATAGTGGGTCGGCTAAGATCTGATCGCCAGGACTGCGTTCTGGGCAGGTGCTGGGAAGGCGGAACCAAGCCGTCCGTGCCGCTAGGGAGCCGAGACTGCCGGAAAGAGGAGCGGCAGGAGGGGGCGTGGTTGTGCAGCCCCACCCCCGGGAGGGGCTTTAGGCACTGGGAAGGAAAGTCCTGTTGGAGGAGTTCGGTGGCTGTTCACACCCGCCTCGCTGTCTTGGAGTCTTGATCTGTCGTCGGCGGGTCGCTGGCACAGGACTAAACATGGCTGAGGCTGGGCTCCAGCCAGATCTGGCTGGGGACAGCACCGCGTGGGCCCAGGATCCACCCAGAGCAGGCAGGCCTTGCTGGGGCCCCAGTCAAGTCCACTTCCAGTGAGGAGAGCCAGCCGGGAGGTCAGTGCCAGAGCTCTGGTGGAGCCCAGACCCTGCCTTCCCTGAGGGCCGCCCCTGTCGCCGCCCTGGGGTCCCTGTCCTCCTATCCTGACTCCTGCCCCAGGGCCACCACCCCTGAACTGTGCCCTGGGGCCCCCACCCTCCACCTGGCCGACTCCAGCTCTGGGCCTGTCAGTCCACCTGGGTCCTCTCTGGGCCCTGAGTGCCTGGACCCTCTGTGCCAAGCACCAGCAAGCAAAGGGGATGACCTTGGGCACCCCCAAGGTGCTGAGACTACAGCCAGTGAGCCCCTGCTGGGGGCCAAAGCCATGGAGGGTGCCTGGGCCCTTCCAACCTGGAAGGAGGAGGGGAGAGAGCAGGCAGCAGGGCAGGGGGAAGAGGAGGAGTGCCCGATCTGCACAGAGCCCTACGGGCCCAGAGAGCGCCGCCTGGCCCTGCTGAACTGTAGCCACGGCCTGTGTGTGGGCTGCCTGCACAGGCTGCTGGGCTCGGCCTCCAGTGCCGACCTGGGCCGGGTGCGCTGCCCGCTGTGCCGCCAGAAGACGCCCGTGCTGGAATGGGAGATCTGCCGGCTACAGGAGGAGCTGCTACAGGCCGACGGGCCCTCACGCCAGCCCCGCCGAGAGGCCCCTGCATCCTATCACCGCAACCCTGGGCCCTGGGGCTCCCTGGAGCACCGCTACCAGCTGCGCTTCCTGGCAGGGCCCGTGGGCGGCCGGGGCTGCCTGCCCTTCCTGCCCTGTCCACCCTGCCTGGGTGCCCGGCTCTGGACCCTGCGGGAGCGGGGACCCTGTGCCCGCCGCCTGGCGCTGCTGAGCCTGCTGGCCCTTGAGCTTCTGGGGCTGCTGCTGGTCTTCACGCCGCTCCTGCTGCTGGGACTGCTCTTCGTGCTCCTGGACCGCTCTGGCCGCTGAGCAGAGCCCAGGACAGCCCCGCCGCCAACAGGCCAGGGGGCCCAGACTGGCCCACGTCCCCATGCCTGGGTGCTGTGAGGCCTGATGACCAGGCTGGAAAAACCCAAGGTTGGGTCCAGGGCAGGGGCCTTCAATCAAGACCTCCCATTGCTGAACCCACAACCAGGGCTACCCAGAGGCCTGACCCTGCCAGAGTCCATGGCTGCACTGCTGCCCAGACACTAGCTGAACCCAAGGACACCAGCGCCCAAGGACAGCTCCTGGAGGAGGCCAGCCCAGCAGGAAAGTCTGTGAGCAGGACCCCATTCACCCTGCGGCAGACGGGCACCGTACTGGCCACGGGCTGACGCCGGCCACACTTCCCCTCCGAGGGCCAGCTGAGCACAGCAGGCATGAAAGCAAACAGAGATACAGCAGTGAGTCAGTTCCTTGGAGAGGGCAGGGACTCCGCCCACCCTGTGTTCAGATAAGGGCCAGTGTGTGTCCCTGAAGGTCAGGCCAGCCGGGGGAGGGGTCCATGCTGCGAAAATTCAGCCTGCAAAGGCTCCTCTCCCCACTTGATCAGGCCCAGACCAGGTGGGGGTTGGCGCTGGCCTGTGTTGCAGGGGACAAGGGCCCACCCAGGCCTTGGAACATAAGCTCTGCCCCTGCACACCCTCATGTCACCACACCTGGGATGGAGACATCAGGTGGCCCAGCGAGAGATGGAGGACTGATCCTGGAACGTGAAGCAGCTTTCAATAAACCAGCTCCTGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-NDOR1:NM_014434:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(29.0=100),PF054027=PqqD=FE(36.0=100)
A:
NA
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4),PF054027=PqqD=PD(47.7=83.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGGGTGCATACTTCTAC
R:
CACGTCTCTGTCTGGAAGCG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)