RnoINT0099541 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2466544-2467518:-
Coord C1 exon
chr3:2467424-2467518
Coord A exon
chr3:2467320-2467423
Coord C2 exon
chr3:2466544-2467319
Length
104 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TTCTGAGGCTTGCCCCCCAGCAA
3' ss Score
3.54
Exon sequences
Seq C1 exon
GCACAGAAGGTGTATGTGCAGCACCGGCTCCGAGAGCTGGGGCCACTTGTCTGGGAGCTGCTGGATGGCCAAGGTGCCTACTTCTACTTAGCAGG
Seq A exon
GTGAGCCAACTTGGGAATGTAGGGGAGTGGACCAGCCTTCGGGGGAGGGGGTAGTGGGGATTGGGGTTTCAGGGTCACTGAGTTTTCTGAGGCTTGCCCCCCAG
Seq C2 exon
CAATGCCAAGTATATGCCTACGGATGTTTCGGAAGCCCTCACAGCCATTTTTCAAGAAGAAGGACGACTCTCCACCACAGATGCAGCTGCCTACCTTGCCAGGCTCCAGCAGACACTGCGCTTCCAGACTGAGACCTGGGCCTGAGGAGCCACTTGAAGCTCACACACACACTGACAGCTACACAGGGGAGCCTGCTGGAGTCTAGAGGGCCCATTGTTACCTTTCGCCCTCTAATCCCAGAACACTGGTTAGACTCACAGTTGAACTTTTTTGGTCCATCTGACCAGGAAGACAGTCCCTGCATACAGCCAAACTCAGTGGAACCCAGTGTCCCATACATAGCCCCAGTGCAGCCTGCACTCCTGGTTTTCTCTCAGTCCCCTTCATTCTGCCCCAAATCTGCACCCTAGTCCATACCTCCAAGGGCCTGCTAAGCCCTCCAAGGGGTGTAGAGCTGGGAGTGGGCTGCACTGCCCCTCTGACCGTGCCATTCCCGTTACCTGTGCAACTCAGGCTCAGTTGAAAAGCCACCAGGGGCCAAGTCTCCTGAGCATTGAGAATGGGCAAAGTCGTCTGTCTTCAGGTCTGTAAACATGAGTAAACTGCCTGGGTAGCCACTCACTTCCATTTTTTGCTTCTAGATTTGAGGGTGGTAGGTGGGACATGCATTATCTGCATCTGCTAGTGGTGGGCAAAGATCTAGGGCATGAGCACAGGCTGTGTATGTGTACCTCCTTGTCCGATACCAAGGCCTGAATCACACCACACTGGGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(29.0=100)
A:
NA
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCAAGGTGCCTACTTC
R:
ACAATGGGCCCTCTAGACTCC
Band lengths:
250-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]