GgaINT0126439 @ galGal4
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr17:964006-967412:+
Coord C1 exon
chr17:964006-964100
Coord A exon
chr17:964101-967212
Coord C2 exon
chr17:967213-967412
Length
3112 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCACGTGCTTTCTCTTCCAGGAA
3' ss Score
12.32
Exon sequences
Seq C1 exon
GAGGAGAAGGTGTATGTTCAGCATCGCATCCGGGAGAATGGACAGCTGCTATGGGAGCTGCTGAATGGCCAGAGCGCTCACATCTACCTGGCTGG
Seq A exon
GTGAGTGAGGTTTCCCCACAGGGACCAGGGGGAGTGGGGCCTTGCATTGCTGCTTCTCCAGCTCCCTGGAGGCTTTCCTGTGGCTCAGCCACCAAAGCAATCACACCCTGCACCCAGCAGGTCTTGGGGTGCTGCAATGGCTGCTACAGAGGGACCAGCTGGTTCCTGCCCTCCTTGCAGCCTGCTCGGCAAGCCCCGGGTTGAGGGTCCTTTTCTTACCTACCCTGCACTCCATTTAGGTGAGGCAGAGCTGGCACCATAGTAAAGTTGCTTCAGCTGACTGCATGTGCGCGTCCCTCCGCTGTCATAGAATCATAGAATCACTGATGTTGGAAAAGACCCACAGGATCATCCAGTCCAACCATTCGCCCTTCACCAATGGTTCTCATTAAACCATGTCCCTCAACACCACATCCAAACATTCCTTGAACACCACCAGGGTCGGTGACTCCACCACCTCTCTGGGGAGCCCATTCCAGTGCCTGACCACCCTTTCAGACAAGTAGTATTTCCTAACGTCCAGCCTGAACCTTCCCTGGCGCAGCTTGAAGCCATTCCCTCTAGTCCTATCACTGTCACACGAGAGAAGAGGCTGACCCCCAGCTCACTACAACCTCCCTTCAGGTAGTTATAGAGAGCAATAAGGTCTCCTCTGAGCCTCCTCTTCTCCAGACTGAACAATCCCAGCTCCTTCAGCCGCTCCTCATAAGGCCTGTGCTGCAGACCCCTCACCAGCTTTGTTGCCCTCCTCTGGACACGCTCCAGGGCCTCCATGTCTTTCTTACAGTGAGGGGCCCAAAACTGGACACAGTACTCGAGGTGCGGCCTCACCAGTGCTGAGTACAGGGGGACAATTACTTCCCTCCTCCTGCTGGCCACACTATTTCTGATACAAGCCAGGATGCCATTGGCCTTCTTGGCCTCCTGGGCACACTGCTGGCTCATGTTCAGTCCAGCATCAATCAACACCCCCAAGTCCATTTCCTCTACACAGTCTTCCAGCCACTCTGCCCCAAGCCTGTAGTGTTGCCTGGGGTTATTGTGGCCAAAGTGCAGGACCCAGCACTTGGTCTTGTTGAACCTCATCCCACCACCAGCGCCTGAGGCTGGTGTCCCCTGAGTGGGGGCTGCCTCAGCTCTGACCCACAGCAAATCCATCTGTGGCACAGCCTCTCATCTTTTCACACTGCTCTCCTCCAGAGGGTCACAGTCAAACTGGGCCAAAGAACTGCAGTTCTGCTGCTTGGGTGAGTGGGAGGATCCTGAAGCAGTATGTGACAGGGCTACACCTGTGCTGTGGCTCTTGAGCGGCCGCTTTTGGGACTGACTGTCTCTTTGGACCTGAGATTGCCTCTCTAGGACAGCTCAGCTGCTTACCAGCTGCTTCACCTGAGCTGCTTGGAAATCCTCAACCCGTGGCCAAAACCTGGTGTCCAGGAGCTGGGAGCATTCAGAGGTGGTGTGTCTGTAGCTCTGTTCCTGCCTCTGTGGCTCTTTTTCTGGACAAATCCTTTCACCTCCCTGCTCTGGTGCTGCTTGGGCAGGGAGGAGACTACCCAGGTGAGAGCATTGTGAAAGACTTTGGGCTCCACGAGCTGACAAGAGAAAAGCAATGGCGTTTGCTCTGCACCCCTGTGACCTGGAAGGCAGGACAAGCCCCATGACTGTGCCTTGCTGTTGACACGAGCAGTGATTGCAGGAGGCTCTTTCCTGCATGTCTCGCACTTCCTGGTGCCTTGCAGGGTGAGACTGGCCTCACTACATTCCTGGGAGAATGAGATTTGTGTTTACTACCTAGGAAGGGCCACTGGCTGCCTCATTGCTCCTGTGCTGGCAGTGCTGCCTGCTCTGCTGTGCCTCCCTGCATTGCAGGGCTGTCTGGGACCTGTAACCCACAGGTGTGGGGCTCGGGTCTGATTTCTTTCCCAAAGTTGTACATCTTGGATAGAACGGAGCTTGTGTAGCTCCTGGTGTGGGATTTCGGAGAGGCCATGAGGATGAATGTTGGGTCCCTCTGGGACCTACTGGCATAGGTGGGTTTTGACCCATGGTTCAGCCCCAAGCGAGCAGCTGTGGACTCAGGGCTGTCTCTCCTTGCTGGCTGTGCCCAGCTTATCCAACCCAGGGCCAATGTGCTGAGGGTGTCTCTGCTCCTGCAGACAACAGATTTGGCATGTTCTCCATCACTGACACGGTTCCAGTATCTTGTGCTCGCATATCAGTGCCTGACTCAGAAGCAGTACGACTCTTCTAAAAACAGAAGACCTCCTTTCTGTGTATTTTGAGACATTAATCAGCTTCAAGGCAAGTCAGAATTCTCCCTGGTTCTTGGGAAACAGCAAGGACGTGCTCATGCCAATTGGAGCTGCCTGGGAGTTTGTTTTTTATTGAATGTTTTTGTCACACAGTTCATCAAATGAAACTCCCGGAAAAAGCCTGAATTCCTTATTTCCCCTTAGAAATAACTGCACTTGGAAGCGTTGAATCCTATTTGGGTATTTTTACACAGGAGCTTGTGTTTACTTCACCATTTCTCTTACTTTGAGGTTTGAAGTGATTTCCATTGTAACTGCCACCATCAAAACAAATGTTTTGGCTTTATTGGAAGGAGGCTGAGGCGGCAGTGCCTTTATCCTGCTCCCTTGCAGCCGTTGTCCTGCCCAGCTCAGGATCAGACACTTCTCCCCTTGAATGCCTCCCTGAGATGAAAGGGTCGTTTCCTGCCCTCCTGCAGTTAAATTATGACTCGGGACTGTTCCCTGTGCTTCTCTAATGATGCTGATGGGGAAATACAGGAGCCAAAACTGAGAACACTGAGCCGTGATGCTCTCAGCTCCATAATGGGTACTGAGGGCACATCTTTGCCTGCAGATGCTGGTGCTTAGAAGCCCTGTGTGGGTAACGGCACTGCTTTCTAGGGAGTGGTGCAGCTGTGTCCTGAAGCTGTCATTTACTGGTGGCAGGGAGCCCACACTGTGGGTGAGGCAGGTTCCCACTGCAGGCAGGCAGTGTGCTGGGGCACTGGGTCTGGCTGCCTCACTGGAGCAGGGGGGAGGTGGATGTGCCTTGGTTTTCCTGCTCCCCCTGTCACACCACGTGCTTTCTCTTCCAG
Seq C2 exon
GAATGCCAAGCAGATGCCAGCAGCGGTGGCTGAAGCCCTGCAGTCAGTGCTGCAGCTGGAAGGTGGCCTGTCGCCCTCCGAAGCAGAAGAGTATTTATCAGCCCTGGAACGGTCCCAGCGCTTCCAGTCTGAAACCTGGTCGTAAGCCTGGCTCCCTGCTCCACCTGAGCTGTGCCTGAATAAAGGAGCCAGCAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(29.0=100)
A:
NA
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]