HsaINT0111737 @ hg19
Intron Retention
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140109547-140109973:+
Coord C1 exon
chr9:140109547-140109654
Coord A exon
chr9:140109655-140109858
Coord C2 exon
chr9:140109859-140109973
Length
204 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CACCCCGCCGTCCTCCCCAGACT
3' ss Score
8.63
Exon sequences
Seq C1 exon
GTGCTCTGTGACTTCCCGCACACAGCTGCCGCCATCCCTCCCGACTACCTGTTGGACCTCATCCCCGTTATCCGGCCGAGGGCCTTCTCCATCGCCTCCTCGCTGCTG
Seq A exon
GTGAGGGGCCTGGTGGTTGGAGCCCAGGACCGGCCCTGGGAAAGCTGGGACCGGGGCTGTGGGGTTTTGTAAGCAGGGGCTGCCCTCTGACCAGGTGACGTTCCCCCAGTCGGACTGCCTCTGCGGGAGGTAGGTGGGGCCCACGGCCCAGGCACAGGTGAGGGCAGCCTTGTTCCACCACCCCCACCCCGCCGTCCTCCCCAG
Seq C2 exon
ACTCACCCCTCACGGCTGCAGATCCTCGTGGCTGTAGTGCAGTTCCAGACTCGCCTCAAGGAGCCCCGCCGGGGCCTCTGCTCCTCCTGGCTGGCATCCCTGGACCCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-NDOR1:NM_014434:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(15.8=100)
A:
NA
C2:
PF0066715=FAD_binding_1=PD(13.1=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGACTTCCCGCACAC
R:
CTTGCCCAGGGTCCAGGG
Band lengths:
220-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)