GgaINT0126435 @ galGal3
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1350871-1351691:+
Coord C1 exon
chr17:1350871-1350978
Coord A exon
chr17:1350979-1351576
Coord C2 exon
chr17:1351577-1351691
Length
598 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TGGCTCCTGTCTGCACACAGGCT
3' ss Score
8.46
Exon sequences
Seq C1 exon
GCCCTCTGGGATTTCCCTCACACCACATCTGCCATTCCACCTGAATACCTGCTGGACCTCATCCCTCGCATCAGACCCCGCGCCTTCTCTATTGCCTCCTCCATGCTG
Seq A exon
GTAAGAGCTCAGCCCTTCTCTGCTTCATGTCAGGCACTGAACTGAGTGCCAGGGCACTGCTGGTGCTGCGCACACCACCGGTGTTCAGGCTGCACTGCCTGACCCTTTGAACATCCACAGCCCACCTGAACCCCCACTGCAGATTAAAGTGTTTGCAAGTGCTGGGACTTGCCCAGTACAGGCCCTGATGCCATAGGGAACACTGGGATGTGGTACCCCGGGGGCTGGCAGGTCCCTGGCTGTGGGAAGGGTGTACTGCTGCTTCCTGCTGCTGCCGGGAGGTGGCGGTGGGACTCGGCCCCGATGGCTTGGCAGATGTCAGCCTCAGCACTGGTGGCATTTGCTTTCCATGGAGGGCTCTTGGCTTGAACTGTCTCTGTCACCATTGCCAGCTGCACAGAGCATTCTTATGGCTGTGCTGCGTTAGGAAAACCTTTTACCCTGCTCTGTACTGTGCCTGAGCAGCTGTTTCAGGCTGGAATGAGTGTTGCCCTGGTATGAGCTGGGCTATGGATTCTGTTCCTGGTGGAGGCATTGGGGTGCTCCTTGCTGAGCTGTGCTGGGTGTCTTGGTTCTCATGGCTCCTGTCTGCACACAG
Seq C2 exon
GCTCACCCTGGCCGGATCCAGATCCTCGTGGCAGTAGTGCGGTACAAGACGCGGCTCAGCAAGCCCCGCCGTGGTCTCTGCTCTACGTGGTTGGCATCTCTCAACCCAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(16.0=100)
A:
NA
C2:
PF0066715=FAD_binding_1=PD(13.2=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTCCCTCACACCACATCT
R:
TTGCTCTGGGTTGAGAGATGC
Band lengths:
214-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]