DreINT0103028 @ danRer10
Intron Retention
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31894756-31896000:+
Coord C1 exon
chr5:31894756-31894863
Coord A exon
chr5:31894864-31895885
Coord C2 exon
chr5:31895886-31896000
Length
1022 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
3' ss Seq
CTCCTTTATTTCTCTCTCAGGAA
3' ss Score
10.25
Exon sequences
Seq C1 exon
GTACTTACAGACTTCCCTCATACTACAGCAGAGTTGAGCATTGGCTGCTTGCTGGATCTGTTTCCAGAAATTCAGCCTCGCTCCTTCTCTATTGCTTCTTCACTTTTG
Seq A exon
GTAAATAATTTCTGGTGTTTTATTTTTAGTAATTCTGCATTTAATTCTACTTTGTGTTTGTAAAAATTGAGCAAGGGTACATTTCATTGCAAAAATGATTATTATAATGTTACAAAGAATTTCTATTTTAAATAGAGGTTGTTCTTTTGAACTTACAGCAGCAATGTTTATCAGAGAATCCTTAAAGTCACAATTTTCACAAAAATATTAAGCAGCATCATTTTCAACATTCATATATATTTGCTGAATATGAAATCAGCATATGATAATGATTTCTAAAGGAATTCCACAGGATTGACACTGATTACTTGAGTAATAAACTGCTGCAAATTTAGCTTTACCAACACAGGAATATATTATGTATTTTTTTTAAATCAACATCTTTAAAATCTTTTAATTCCACCATTTCACGCTATTACATTGTCCTGTATTGTACTGCCCCCTTCTAATGTTTTTCTTCTTTTTTAAATATTTGCCAAATTATGTTTAGCCGAGCAAATAGATTTTCACAGTATGTCTGATAATATTTTTTCTTCTGGAAAAAAATCTTATTTGTTTTATTTCAGCTAGAATAAATGCAGTTTTTTATTTTTTAAACACCATTTTAGTGACAAAATTATTAGCCCCTTTAAGTGATATTTTTTCTCAATAGTCTACAGAACAAACCATTGGTTTACAATTACTTGTCTAATTACCCTAATCTGCCTAGTTAACCTAATTAACCTAGTTAAGCCTTTAAATTTCACTTTAAGCTGTGTAGAAGTGTCTTGAAAAATATCTAGCCAAATATTATTTACTGTCATCATGGTAAAGATAAAATAAATGCATTATTAGAAATTAGTTATTAAAACTATTATGATTAAAAATGTTTTGAATAAATCTTCTCTCCATTAAGCAGAAATTGGGAAAAATTAATAATTCAGTCTAATAATTCAGGGGGACTAATAATTCTTACTTCAACTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATACCTCCTTTATTTCTCTCTCAG
Seq C2 exon
GAACACCCTAATCGTATCCAGATCTTGCTTGCTGTGGTGAAGTATAAAACTATGCTCGTAAAGCCACGCAAAGGTCTCTGCTCTTCTTGGCTGGCGTCTCTGGACCCGTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429:ENSDART00000033545:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(15.9=100)
A:
NA
C2:
PF0066715=FAD_binding_1=PD(13.2=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTACAGACTTCCCTCATACTACA
R:
CTTTAGACGGGTCCAGAGACG
Band lengths:
222-1244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]