RnoINT0099549 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2468084-2468432:-
Coord C1 exon
chr3:2468325-2468432
Coord A exon
chr3:2468199-2468324
Coord C2 exon
chr3:2468084-2468198
Length
126 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
AGCCATCACTGTGTCCATAGGCT
3' ss Score
7.31
Exon sequences
Seq C1 exon
GTGCTGTGTGACTTCCCACACACGGCGGGTGCCATTCCTCCAGACTACCTTTTGGACTTGATCCCTCGGATCCGTCCCCGGGCCTTCTCCATTGCTTCATCCCTACTG
Seq A exon
GTGAGGACTCTGAGTAGGACTGAAGGCTGGCTGGGAAAGCTGAGACTGGGTAGGGCATTTGTCCCTCCTGGGGTTGGTAGCAGGCAGGAGTGCTTTAGCAAGTTACAGCCATCACTGTGTCCATAG
Seq C2 exon
GCTCACCCCAGGAGGCTACAGATCCTTGTGGCTGTGGTAAAGTACCAGACTCGCCTGAAGGAGCCCCGCCGTGGCCTCTGCTCCTCCTGGCTAGCATCCCTGACTCCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(15.8=100)
A:
NA
C2:
PF0066715=FAD_binding_1=PD(13.1=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTGTGACTTCCCACA
R:
CCCAGGAGTCAGGGATGCTAG
Band lengths:
219-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]