HsaINT0111729 @ hg38
Intron Retention
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr9:137216094-137216416:+
Coord C1 exon
chr9:137216094-137216188
Coord A exon
chr9:137216189-137216271
Coord C2 exon
chr9:137216272-137216416
Length
83 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TCTGCGACCTGCCCCTCTAGCAA
3' ss Score
7.17
Exon sequences
Seq C1 exon
GAGCAGAAAGTATATGTGCAGCACCGGCTCCGGGAGCTGGGGTCGCTTGTGTGGGAACTGCTGGACCGCCAGGGTGCATACTTCTACCTGGCAGG
Seq A exon
GTGAGCTGGCCTGCGTGCAGCAGGAGTGGGCCCAGCCCCTGAGTGCCAGGCCTCATTGCGCCTTCTGCGACCTGCCCCTCTAG
Seq C2 exon
CAACGCCAAGTCCATGCCAGCGGACGTCTCGGAAGCCCTGATGTCCATCTTCCAGGAGGAGGGTGGACTCTGCAGCCCGGACGCAGCCGCGTATCTAGCCAGGCTCCAGCAGACACGGCGCTTCCAGACAGAGACGTGGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566:ENST00000344894:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(29.0=100)
A:
NA
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGGGTGCATACTTCTAC
R:
CACGTCTCTGTCTGGAAGCG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development