HsaEX0042226 @ hg38
Exon Skipping
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr9:137215899-137217009:+
Coord C1 exon
chr9:137215899-137216017
Coord A exon
chr9:137216094-137216166
Coord C2 exon
chr9:137216272-137217009
Length
73 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTCTCTGCCCTACAGGAG
3' ss Score
10.82
5' ss Seq
AGGGTGCAT
5' ss Score
-0.15
Exon sequences
Seq C1 exon
GAAACTTCTTGTTTTTTGGCTGCCGCTGGCGGGACCAAGACTTCTACTGGGAGGCTGAGTGGCAGGAGCTGGAGAAGCGGGACTGTCTGACCCTCATCCCTGCCTTCTCCCGGGAACAG
Seq A exon
GAGCAGAAAGTATATGTGCAGCACCGGCTCCGGGAGCTGGGGTCGCTTGTGTGGGAACTGCTGGACCGCCAGG
Seq C2 exon
CAACGCCAAGTCCATGCCAGCGGACGTCTCGGAAGCCCTGATGTCCATCTTCCAGGAGGAGGGTGGACTCTGCAGCCCGGACGCAGCCGCGTATCTAGCCAGGCTCCAGCAGACACGGCGCTTCCAGACAGAGACGTGGGCCTGAGGCCCGCGGCTGCCCGTGCCCCCTCTGACAGCCATCCTCCTGGGAGCCCAGGAAGGCATCCACGAGGGAGCTCCTGGCCAGCAGCCGTCATCCTCTCGGACCAGCCAGCTGGTCCTCTGGGAACAGCCAGCTCCCGAGCACAGCCGCACTCCTGTTGACCCTGGATCCCACCCTTTGAGCCTGACCCCACTGCAGCCTCTGCCCAGCCAGCCCTGCGCTCCCCCACCCTGACAGTGAGCTGTGTCCTCGTCCCCCCACCCCCTTCCCAGTCAAGGTGGTGGCCTGGGCCGCTCCACCTCACCGGTGCAGTGACCCAGGACGGCATCAGCAGCCCAGTGAGCACCAGGGGTGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-'19-31,'19-30,20-31
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
PF0017516=NAD_binding_1=FE(26.7=100)
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCTGACCCTCATCCCTG
R:
CACGTCTCTGTCTGGAAGCG
Band lengths:
176-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development