RnoEX0058780 @ rn6
Exon Skipping
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2466544-2467706:-
Coord C1 exon
chr3:2467588-2467706
Coord A exon
chr3:2467424-2467518
Coord C2 exon
chr3:2466544-2467319
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCTCTGATACCTACCTGCAGGCA
3' ss Score
8.67
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GAAACGTCTTATTCTTCGGCTGCCGCCAGCGGGATCAGGACTTCTACTGGCAGACTGAGTGGCAGGAGCTAGAGCAGAGGGGCTGCCTGACCCTGGTTACAGCCTTCTCCCGGGAGCAG
Seq A exon
GCACAGAAGGTGTATGTGCAGCACCGGCTCCGAGAGCTGGGGCCACTTGTCTGGGAGCTGCTGGATGGCCAAGGTGCCTACTTCTACTTAGCAGG
Seq C2 exon
CAATGCCAAGTATATGCCTACGGATGTTTCGGAAGCCCTCACAGCCATTTTTCAAGAAGAAGGACGACTCTCCACCACAGATGCAGCTGCCTACCTTGCCAGGCTCCAGCAGACACTGCGCTTCCAGACTGAGACCTGGGCCTGAGGAGCCACTTGAAGCTCACACACACACTGACAGCTACACAGGGGAGCCTGCTGGAGTCTAGAGGGCCCATTGTTACCTTTCGCCCTCTAATCCCAGAACACTGGTTAGACTCACAGTTGAACTTTTTTGGTCCATCTGACCAGGAAGACAGTCCCTGCATACAGCCAAACTCAGTGGAACCCAGTGTCCCATACATAGCCCCAGTGCAGCCTGCACTCCTGGTTTTCTCTCAGTCCCCTTCATTCTGCCCCAAATCTGCACCCTAGTCCATACCTCCAAGGGCCTGCTAAGCCCTCCAAGGGGTGTAGAGCTGGGAGTGGGCTGCACTGCCCCTCTGACCGTGCCATTCCCGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616-'13-24,'13-23,15-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
PF0017516=NAD_binding_1=FE(29.0=100)
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGGGATCAGGACTTCTA
R:
GTGGTGGAGAGTCGTCCTTCT
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]