BtaEX0024079 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105883825-105884837:-
Coord C1 exon
chr11:105884719-105884837
Coord A exon
chr11:105884541-105884635
Coord C2 exon
chr11:105883825-105884457
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCCCGCCCGCTGCCCCGCAGGAG
3' ss Score
8.9
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GAAATGTGCTGTTCTTCGGATGCCGCCGGCGGGACCAGGACTTCTACTGGGAGGCCGAGTGGGAGCAGCTGCAGGCGAGAGGCTGCCTGACTCTGGTCACGGCCTTCTCCCGGGAGCAG
Seq A exon
GAGCAGAAGGTGTATGTGCAGCACCGGCTCCGGGCGCTCGGGCCGCTGGTGTGGGAGCTGCTGGACGGCCGGGGCGCCCATTTCTACCTGGCAGG
Seq C2 exon
CAACGCCAAGTACATGCCGGCCGATGTGTGTGACACCCTGCTGTCCATCTTCCGGGAGGAGGGCGGGCTCTCTGACCCCGATGCGGCCGCCTACCTCGCTCAGCTGCAGCGGACACTGCGTTTCCAGACTGAGACGTGGGCCTGAAGGGCCATCCTGCCGTTGGCCACAGCCACCCTGCCCGACGCTCTCTGGGGGCTGTCGTTGGCTCTCGCCCTGTCTGCTACCAGCTGGGAGGGTGGTCGACTCTCCTGCACAGACCCCAGCAGAGGGAGGACGCCATGAGCAGCACACACCTGCCCTCTCAGCTCCAGGAAAGCCTCAGCAATAAACACCGGGCTCTTGGTGGCCGCTTCCTGCCTGCTCTTCTTAGACGGAAGTGGGCCTCGGGCAGTGGGTGGTCCAGAGCAGGTCTGGATGGAATAGCCTGCTCTGCTGGGCACGGGCACCGTGGCTCAGCCCACACTGCAGTGCCTGAGTCTGATGATGAGGGTGCCAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
PF0017516=NAD_binding_1=FE(29.0=100)
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCTGTTCTTCGGATGCC
R:
GAAGATGGACAGCAGGGTGTC
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development