DreEX6011746 @ danRer10
Exon Skipping
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31896714-31898585:+
Coord C1 exon
chr5:31896714-31896832
Coord A exon
chr5:31898010-31898104
Coord C2 exon
chr5:31898238-31898585
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTAAATGTTTCACTTGCAGGAG
3' ss Score
10.57
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTAATGTGCTATTCTTTGGCTGTCGATCTGAATCTAAAGACTTCTACTGTGGATCAGAATGGCAGGAGAAGGTGCAGGCGGGACAAATGATACTCGTCACAGCCTTTTCCAGAGATCAG
Seq A exon
GAGGATAAAGTCTATGTTCAGCATCGTGTGAAGGAACAAGGCAAACTGTTATGGGATCTGATAGCAAAGAAGAATGCGTTCTTTTACATAGCAGG
Seq C2 exon
GAATGCCAAGCAGATGCCAACAAGCGTATGTGACGCACTGAAAGCAGTTTTCCAGAAAGAAGGTGGCATGTCTGAAAACCAGGCACAGGAGATGCTGGATGGCATGGAGAAAAATGGACGCTTTCAAAGTGAAACCTGGTCCTGATGTCTCAATTTAAACTGCAGCCTTGATGAGCAACATAGCCTTAAGAGTGAACCTAAGTTACATGCTGATTGGATTCAACCAAGTTTGAAAGGAGAATGTCAAGCCTCAATTGTGGGGTGCTTTTGATTTATATTTATGCATACGTGTTCAATCATACATTACCAGTTATATTCTTTTTAAAAAATAAATATTGAATGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429-'21-18,'21-17,22-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.229
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
PF0017516=NAD_binding_1=FE(29.0=100)
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGCGGGACAAATGATAC
R:
GCGTCCATTTTTCTCCATGCC
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]