GgaEX0013053 @ galGal3
Exon Skipping
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1353043-1359839:+
Coord C1 exon
chr17:1353043-1353161
Coord A exon
chr17:1356433-1356527
Coord C2 exon
chr17:1359640-1359839
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTCAGCACTGTTTCCTGCAGGAG
3' ss Score
7.73
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGAACTGCTTGTTCTTTGGCTGCCGCCAGAAATCCAAGGACTTCTACTGCCAAGCAGAGTGGGAAGAGCTGGTGACAAAGGGCTTCCTGATGCTTTTCACGGCCTTCTCCAGGGACCAG
Seq A exon
GAGGAGAAGGTGTATGTTCAGCATCGCATCCGGGAGAATGGACAGCTGCTATGGGAGCTGCTGAATGGCCAGAGCGCTCACATCTACCTGGCTGG
Seq C2 exon
GAATGCCAAGCAGATGCCAGCAGCGGTGGCTGAAGCCCTGCAGTCAGTGCTGCAGCTGGAAGGTGGCCTGTCGCCCTCCGAAGCAGAAGAGTATTTATCAGCCCTGGAACGGTCCCAGCGCTTCCAGTCTGAAACCTGGTCGTAAGCCTGGCTCCCTGCTCCACCTGAGCTGTGCCTGAATAAAGGAGCCAGCAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920_MULTIEX1-12/12=11-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
PF0017516=NAD_binding_1=FE(29.0=100)
C2:
PF0017516=NAD_binding_1=PD(10.3=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTTTCACGGCCTTCTCC
R:
ACGACCAGGTTTCAGACTGGA
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]