MmuEX1018708 @ mm10
Exon Skipping
Gene
ENSMUSG00000027878 | Notch2
Description
notch 2 [Source:MGI Symbol;Acc:MGI:97364]
Coordinates
chr3:98135326-98137628:+
Coord C1 exon
chr3:98135326-98135831
Coord A exon
chr3:98136130-98136142
Coord C2 exon
chr3:98137275-98137628
Length
13 bp
Sequences
Splice sites
3' ss Seq
TCCAGCCTAGCCTGCTGCAGGAT
3' ss Score
0.81
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGGTTCTCTGGGGCGAGATGCCAGAGCAGCTGTGGACAAGTGAAGTGCAGGAGAGGGGAGCAGTGTATCCACACTGACTCGGGACCTCGCTGCTTCTGCCTGAACCCCAAGGACTGCGAGTCAGGATGTGCCAGTAACCCCTGCCAGCATGGGGGCACCTGCTATCCTCAGCGCCAGCCTCCTCACTATTCCTGCCGCTGCCCTCCGTCGTTCGGGGGCAGCCACTGCGAACTCTACACAGCCCCCACCAGCACCCCTCCTGCTACCTGTCAGAGTCAGTACTGCGCCGACAAGGCTCGGGATGGCATCTGTGACGAGGCCTGCAATAGTCATGCCTGCCAGTGGGATGGAGGTGACTGTTCCCTCACTATGGAGGACCCCTGGGCCAACTGCACCTCCACTCTTCGCTGCTGGGAATACATCAACAACCAGTGTGATGAGCAGTGCAACACCGCAGAGTGCCTGTTTGACAACTTTGAGTGCCAGAGGAATAGCAAGACGTGCAA
Seq A exon
GATGGATGGAAAG
Seq C2 exon
GTATGACAAATACTGTGCAGACCACTTCAAAGACAACCACTGTGATCAGGGATGCAACAGCGAGGAGTGTGGCTGGGATGGGCTGGACTGCGCTTCGGACCAGCCTGAGAACCTGGCAGAGGGCACCCTGATCATCGTGGTGCTCCTGCCCCCTGAACAGCTGCTGCAGGATTCGCGAAGCTTCTTGAGGGCCCTGGGCACCCTGCTCCACACCAACTTGCGCATTAAACAAGATTCTCAGGGCGCTCTCATGGTGTACCCCTACTTTGGGGAGAAGTCAGCTGCCATGAAGAAGCAGAAGATGACACGCAGGTCTCTTCCTGAGGAGCAGGAGCAGGAGCAGGAGGTGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027878-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.092
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(14.7=3.0),PF0006612=Notch=WD(100=21.9),PF0006612=Notch=WD(100=21.9),PF0006612=Notch=PU(15.8=3.6)
A:
NO
C2:
PF0006612=Notch=PD(81.6=26.1),PF068168=NOD=WD(100=47.9),PF076847=NODP=PU(4.9=2.5)
Main Inclusion Isoform:
ENSMUST00000079812fB13718
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAACTTTGAGTGCCAGAGG
R:
GCTGTTGCATCCCTGATCACA
Band lengths:
100-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types