RnoEX0060467 @ rn6
Exon Skipping
Gene
ENSRNOG00000018835 | Notch2
Description
notch 2 [Source:RGD Symbol;Acc:3188]
Coordinates
chr2:200305628-200307907:+
Coord C1 exon
chr2:200305628-200306133
Coord A exon
chr2:200306440-200306452
Coord C2 exon
chr2:200307560-200307907
Length
13 bp
Sequences
Splice sites
3' ss Seq
TCCAGCCTAGCCTGCTGCAGGAT
3' ss Score
0.81
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGGTTCTCCGGGGCAAGATGCCAGAGCAGCTGTGGACAAGTGAAGTGCAGAAGAGGGGAGCAGTGTGTGCACACCGCCTCGGGACCCCACTGCTTCTGCCTGAACCGCAAGGACTGCGAGTCAGGTTGCGCTAGTAACCCCTGCCAGCACGGAGGCACCTGCTACCCTCAGCGCCAGCCTCCTTACTACTCTTGCCGCTGCTCCCCACCGTTCTGGGGCAGCCACTGCGAGAGCTACACAGCCCCCACCAGCACCCCTCCTGCTACCTGTCTGAGTCAGTACTGTGCCGACAAGGCTCGGGACGGCATCTGTGATGAGGCCTGCAACAGTCATGCCTGCCAGTGGGATGGAGGTGACTGTTCCCTCACTATGGAGGACCCCTGGGCCAACTGCACCTCCTCACTTCGCTGCTGGGAGTACATCAACAACCAGTGTGATGAGCTGTGCAACACTGCAGAGTGCCTGTTTGACAACTTTGAATGCCAGAGGAATAGCAAAACCTGCAA
Seq A exon
GATGGATGGAAAG
Seq C2 exon
GTATGACAAATACTGTGCAGACCACTTCAAAGACAATCACTGCGATAAGGGATGCAACAACGAGGAGTGTGGCTGGGACGGGCTGGACTGCGCTGCGGACCAGCCTGAGAACCTGGCGGAGGGCATCCTGGTCATCGTGGTGCTCCTACCCCCTGAGCAGCTGCTTCAGGATTCTCGAAGCTTCTTGAGGGCCCTGGGCACCCTGCTCCACACCAACTTACGCATTAAACAAGACTCTCAGGGCGCCCTCATGGTGTACCCCTACTATGGGGAGAAGTCAGCTGCCATGAAGAAGCAGAAGGTGGCACGCAGGTCTCTTCCTGATGAGCAGGAACAGGAGATAATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018835-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(14.7=3.0),PF0006612=Notch=WD(100=21.9),PF0006612=Notch=WD(100=21.9),PF0006612=Notch=PU(15.8=3.6)
A:
NO
C2:
PF0006612=Notch=PD(81.6=26.5),PF068168=NOD=WD(100=48.7),PF076847=NODP=PU(4.9=2.6)
Main Inclusion Isoform:
ENSRNOT00000025718fB9765
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCAGAGTGCCTGTTTGA
R:
TGTCTTTGAAGTGGTCTGCACA
Band lengths:
92-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]