MmuEX1019114 @ mm10
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:145118588-145124375:+
Coord C1 exon
chr3:145118588-145118786
Coord A exon
chr3:145119526-145119717
Coord C2 exon
chr3:145124211-145124375
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTTAACTCCATACAGACA
3' ss Score
5.81
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAAACCGCAGGCCGGTTACTAGCAACGTTGAGCTCCAAGGTGGACGCGCTCAGGCCGCCGCTGCCTGTTCTGGTGACTCGTCAGCTTCTCTCCCCGCGCTCCCTGCCCTTCCCTCTGGCCTCCTACTCTCTCTGCACTCTCCGCCTGCTGCAGTGACCCAGGGCCGGGCAGGCCTCAGAGAGGCCTCCGGCCATTGTAG
Seq A exon
ACAAATGGGAGTCAGGATGAGTATAGAAACGATCCGTTGCAGGCCACTGATGCCCCCAACCCCCACCCTCTGGTTTAGTAGTTCTCCATTTATGACTGCTTCAGCAATGACTTTCTACAAAGAACAGATAGGTCTTCAAGGTTGTTCTGTAAAATCAGTTCTGATCAACTCAGGCTTGTAAGTAAATTTAAG
Seq C2 exon
CTTTCAGTGTCTGTGGAAAAGTTGTTGCTGAAGTGCCTGTAAAAGAGTCACTGAGTTGATGGAGATGCCTACTAGTGATGGAAGTCTTTCAGAGGGCCTGATTTCTTATCTCATCCGGGAGAGAGGATCTGCTCCACAGTGTGCCCCTGAGAAGCACCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.218
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCGTCAGCTTCTCTCCC
R:
GCAGATCCTCTCTCCCGGATG
Band lengths:
258-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types