MmuEX1019115 @ mm10
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:145118588-145124375:+
Coord C1 exon
chr3:145118588-145118786
Coord A exon
chr3:145120646-145120678
Coord C2 exon
chr3:145124211-145124375
Length
33 bp
Sequences
Splice sites
3' ss Seq
TCACTTTTTTTTTTCCATAGTGG
3' ss Score
9.49
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAAACCGCAGGCCGGTTACTAGCAACGTTGAGCTCCAAGGTGGACGCGCTCAGGCCGCCGCTGCCTGTTCTGGTGACTCGTCAGCTTCTCTCCCCGCGCTCCCTGCCCTTCCCTCTGGCCTCCTACTCTCTCTGCACTCTCCGCCTGCTGCAGTGACCCAGGGCCGGGCAGGCCTCAGAGAGGCCTCCGGCCATTGTAG
Seq A exon
TGGAGTCTAAAATGCTATGCAATTATCTCTTTG
Seq C2 exon
CTTTCAGTGTCTGTGGAAAAGTTGTTGCTGAAGTGCCTGTAAAAGAGTCACTGAGTTGATGGAGATGCCTACTAGTGATGGAAGTCTTTCAGAGGGCCTGATTTCTTATCTCATCCGGGAGAGAGGATCTGCTCCACAGTGTGCCCCTGAGAAGCACCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.218
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCTCTCTGCACTCTCCGC
R:
ACAGGCACTTCAGCAACAACT
Band lengths:
116-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types