MmuEX1020059 @ mm10
Exon Skipping
Gene
ENSMUSG00000030660 | Pik3c2a
Description
phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide [Source:MGI Symbol;Acc:MGI:1203729]
Coordinates
chr7:116417453-116442678:-
Coord C1 exon
chr7:116442591-116442678
Coord A exon
chr7:116420791-116420893
Coord C2 exon
chr7:116417453-116418581
Length
103 bp
Sequences
Splice sites
3' ss Seq
AAAAGCACTTGTTCTTGCAGAGG
3' ss Score
6.3
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
CCAGTGGGTGTTTGAATTCAGTGACACGAAGGAAGCATCCCTGTTTGAACAAGATTACTTCTTAAAAAGTATCCCTAAATCTTTCCAG
Seq A exon
AGGACCTGGACTCCATTCCCAGCACCTGCGTGGCAGCTCACAATCATCTGTGACTCCAGTTCCAGGGGATCCAATGATTTTTGGCAACCTCCATGTGTACGAG
Seq C2 exon
GTCCTGGTATTTTGGAATCTACAAGAAAAAAAGATTAAGAGGTTTGTTCTCTTTTGTGGACATGGCTCAGATTTCCAACAACAGTGAATTTAAACAATGTTCATCTTCACATCCAGAACCAATAAGAACCAAAGATGTGAACAAAGCAGAAGCGTTACAGATGGAAGCAGAAGCCTTAGCAAAACTGCAGAAGGATAGACAAATGACTGACAGCCCAAGAGGCTTTGAGCTGTCTAGCAGCACTAGACAAAGAACACAAGGTTTTAACAAACAGGATTATGATCTCATGGTGTTTCCTGAGTTGGATTCCCAAAAAAGAGCAGTAGATATTGATGTAGAAAAGCTCACCCAGGCTGAACTTGAGAAGATATTGCTGGACGACAATTTTGAAACTAGAAAACCTCCTGCATTGCCAGTTACTCCTGTTCTGAGCCCTTCGTTCTCAACACAGCTGTATCTTAGACCTAGTGGTCAAAGAGGCCAGTGGCCCCCTGGATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030660_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.287
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACACGAAGGAAGCATCC
R:
TTGCTAAGGCTTCTGCTTCCA
Band lengths:
251-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types