MmuEX1020281 @ mm10
Exon Skipping
Gene
ENSMUSG00000087141 | Plcxd2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:MGI Symbol;Acc:MGI:3647874]
Coordinates
chr16:45980236-46010218:-
Coord C1 exon
chr16:46010197-46010218
Coord A exon
chr16:46009694-46009928
Coord C2 exon
chr16:45980236-45980696
Length
235 bp
Sequences
Splice sites
3' ss Seq
ATGTGCTCTGAAATGTTTAGAGA
3' ss Score
4.19
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
ATGCCCTGTGGGCACCTGTCGT
Seq A exon
AGAGCCCCGAGCGGTGATGACCACAGAGTGAGTGGCACTAGACTGAGCCTGTCTAAATCGTGGACGACAGGGATGCTTGCATTTAGAAAGGCCAGAAGGAAACTCAGGATGGGTACCATCTGCTCTCCCAATCCCAGCGGGACAAAGACAGCCTCGGAGGTCTGCAATGCCGACTGGATGGCCTCGCTCCCCGCTCACCTCCACAACGTCCCCCTTTCCAATCTGGCAATCCCAG
Seq C2 exon
GCTCCCATGATTCATTCAGCTACTGGGTAGATGAAAAGTCCCCAGTGGGGCCTGACCAAACCCAAGCTGTCATACGCCTTGCCCGGATCTCCTTGGTGAAAAAGTTAATGAAGAAATGGTCTGTAACTCAGAACCTGACCTTCAGGGAGCAGCTGGAGGCTGGGATCCGCTACTTTGACCTACGGGTGTCTTCCAAGCCTGGAGACACTGACCAGGAGATCTACTTCATCCACGGGCTCTTTGGCATCAAGGTTTGGGATGGGTTGATGGAGATTGATGCCTTCCTCACTCAGCACCCTCAAGAGATCATCTTCCTGGATTTCAACCACTTCTATGCCATGGATGAGAGCCACCACAAATGCCTGGTTCTGCGGATCCAGGAGGCCTTTGGGAACAAGCTGTGCCCAGCCTGCAGCGTGGAAAGCATGACACTGCGGAGTCTGTGGGAGAAAAAGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087141_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.145 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PU(5.3=16.4)
A:
PF0038814=PI-PLC-X=PU(5.3=16.4)
C2:
PF0038814=PI-PLC-X=FE(90.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types