RnoEX0066824 @ rn6
Exon Skipping
Gene
ENSRNOG00000042289 | Plcxd2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:RGD Symbol;Acc:1563504]
Coordinates
chr11:57207656-57239292:+
Coord C1 exon
chr11:57207656-57207914
Coord A exon
chr11:57208212-57208376
Coord C2 exon
chr11:57238832-57239292
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTCTAATTCGTGGACAACAGGGA
3' ss Score
2.19
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
GGGGCCGCCGGTTACTCTTCTGAGAGCCCTTCAGAAAAGCACAGGGCAGTGGGCAGAGAAGCCAGGGGGCGGGGGTGCAGGCAGGCCCAGCTTGTGTACCAGCCCGGGGACACCCACGGAAGCACCCATGAATAAGATATGGTGCAACCCGGGCGCGCACGTGTGTGCAGCCCGCTGGCACGTCTCTATGCCCGGTAGGCACCTGTCGTGTGAGTAGCTCCGGGTGTGGCTGTTCCTGGATGCTGTGGGTTTCAGTAAG
Seq A exon
GGATGCTTGCATTTAGAAAGGCCAGGAGGAAACTCAGGATGGGCACCATCTGCTCTCCCAATCCCAGCGGGACAAAGACAGCCTCGGAGGTCTGCAATGCTGACTGGATGGCCTCGCTCCCCCCTCACCTCCACAACGTCCCCCTTTCCAATCTGGCAATCCCAG
Seq C2 exon
GCTCCCATGATTCATTCAGCTACTGGGTAGACGAAAAGTCCCCAGTGGGGCCTGACCAAACCCAAGCTGTCAAACGCCTTGCCCGGATCTCCTTGGTAAAGAAATTAATGAAGAAATGGTCTGTAACTCAGAACCTGACCTTCCGGGAGCAGCTAGAGGCTGGGATCCGCTACTTTGACCTACGTGTGTCTTCTAAGCCCGGAGACACTGACCAGGAGATCTACTTCATCCATGGGCTCTTTGGCATCAAGGTTTGGGATGGGTTGATGGAGATTGATGCATTCCTCACTCAGCATCCTCAAGAGATCATCTTCCTGGATTTCAACCACTTCTACGCCATGGATGAGGCCCACCACAAATGCCTGGTTCTGCGGATCCAGGAGGCCTTTGGGAACAAGCTGTGCCCAGCCTGCAGTGTGGAAAGCATGACACTGCGGACCCTGTGGGAGAAGAAGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042289_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.164 C2=0.006
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PU(5.3=16.4)
A:
PF0038814=PI-PLC-X=PU(5.3=16.4)
C2:
PF0038814=PI-PLC-X=FE(90.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGGATGCTGTGGGTTT
R:
ATCTCCTGGTCAGTGTCTCCG
Band lengths:
248-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]